Viral concentrate

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Unknown (134)
Transcriptomics (77)
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Organisms

Homo sapiens (26)
Mus musculus (14)
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Corynebacterium glutamicum ATCC 13032 (2)
Corynebacterium glutamicum (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
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Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Ehrlichia chaffeensis str. Arkansas (1)
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synthetic construct (1)
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Organisms

Corynebacterium glutamicum ATCC 13032 (2)
marine metagenome (2)
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beach sand metagenome (1)
Influenza A virus (1)
Apis mellifera (1)

Repository

biostudies-arrayexpress (76)
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pride (9)
geo (2)

Tissue

Blood plasma (2)
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Blood (1)
Cerebrospinal fluid (1)
T cell (1)

Disease

Infiltrating ductal carcinoma (2)
COVID-19 (2)
Post-stasis (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Invasive Ductal Carcinoma (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infected (1)
IBDV infected (1)
Head and neck squamous cell carcinoma (1)
S enteritidis (1)
5 days post MHV infection (1)
Normal (1)
Meningitis (1)
Respiratory syncytial virus infectious disease (1)

Technology Type

Mass spectrometry (9)
Mass Spectrometry (9)
Shotgun proteomics (7)
Mass spectrometry assay (4)
Bottom-up proteomics (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (3)
Liquid Chromatography MS - negative - reverse-phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
G2565AA DNA microarray scanner [Agilent] (2)
Scanning hardware (2)
Illumina HiSeq 4000 (2)
UPLC-LTQ-MS (2)
Gas Chromatography MS - positive (2)
Affymetrix GeneChip Scanner (1)
Axon GenePix4000B (1)
Other (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
NanoDrop (1)
Bioanalyser (1)
Axon- GenePix4000B (1)
GenePix 4000B [Axon Instruments] (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Agilent 7890 (1)
6460 Triple Quadrupole LC/MS (Agilent) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2010 (10)
2007 (9)
2015 (8)
2008 (7)
2006 (7)
2026 (6)
2012 (6)
2016 (5)
2025 (5)
2022 (4)
2014 (4)
2011 (4)
2009 (4)
2023 (4)
2024 (3)
2013 (3)
2018 (3)
2005 (2)
2004 (2)
2021 (2)
2020 (1)
2027 (1)

CHEBI ID

CHEBI:30805 (3)
CHEBI:16113 (3)
CHEBI:17822 (3)
CHEBI:16000 (3)
CHEBI:30769 (3)
CHEBI:140071 (2)
CHEBI:348530 (2)
CHEBI:60647 (2)
CHEBI:30830 (2)
CHEBI:17475 (2)
CHEBI:28822 (2)
CHEBI:24786 (2)
CHEBI:32365 (2)
CHEBI:78679 (2)
CHEBI:33569 (2)
CHEBI:17553 (2)
CHEBI:28747 (2)
CHEBI:29019 (2)
CHEBI:48430 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:48928 (2)
CHEBI:18186 (2)
CHEBI:28757 (2)
CHEBI:26986 (2)
CHEBI:22652 (2)
CHEBI:16811 (2)

Metabolite Name

L-Aspartic acid (4)
Succinic acid (4)
L-Glutamic acid (4)
Hypoxanthine (4)
Ethanolamine (3)
N-Formyl-L-methionine (3)
L-Cystine (3)
AMP (3)
L-Lysine (3)
L-Dopa (3)
Glucose 6-phosphate (3)
L-Proline (3)
4-Pyridoxic acid (3)
Mannitol (3)
L-Malic acid (3)
L-Arginine (3)
Maleic acid (3)
Pantothenic acid (3)
Taurine (3)
Glyceric acid (3)
Spermidine (3)
Salicylic acid (3)
Palmitic acid (3)
L-Tryptophan (3)
L-Glutamine (3)
Glutaric acid (3)
Myristic acid (3)
Uric acid (3)
L-Serine (3)
Xanthine (3)

First Public Date

2013 (4)
2025 (2)
2023 (2)
2015 (2)
2022 (1)
2019 (1)

Classification

viruses (2)
bacteria (2)

Study type

Transcription profiling by array (62)
RNA-seq of coding RNA (4)
Methylation profiling by array (3)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (18)
2021 (18)
2023 (14)
2015 (12)
2012 (12)
2010 (12)
2025 (12)
2013 (11)
2024 (10)
2007 (10)
2018 (9)
2020 (8)
2016 (8)
2008 (8)
2006 (8)
2014 (7)
2011 (7)
2009 (6)
2019 (6)
2017 (5)
2026 (4)
2005 (2)
2004 (2)
2001 (1)

Lab affiliation

Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
1. Department of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 2. Department of Epidemiology, Gillings School of Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 3. Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA (1)
Associate Professor at University of Campinas, Sao Paulo-Brazil (UNICAMP-SP. (1)
Division of clinical sciences (IKVL), Department for infectious diseases, BMC D13, Lund University (1)
Institute of Medical Virology, University of Zurich, Switzerland (1)
Massachusetts General Hospital 55 Fruit Street Boston, MA 02114 (1)
Professor of College of the Environment and Ecology (1)
The Pirbright Institute, Woking, Surrey, GU24 0NF, UK (1)

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Transcription profiling of mouse fibroblasts infected with murine hepatitis virus using two array platforms to compare the potential for interference from viral RNA

Infection of cells with murine hepatitis virus strain A59 (MHV-A59) results in massive amounts of viral RNA within infected cells. When applying transcriptional profiling by means of microarray analysis, this could potentially cause problems since high amounts of viral RNA could in theory interfere ...

ORGANISM(S): Mus musculus

2008-05-21 | E-MEXP-1373 | biostudies-arrayexpress

Metaproteomic analysis of viral concentrates reveals vertical shift of viral community and microbial metabolism in the ocean

Viral concentrates (VCs) contained both viral particles and cell-affiliated components. In this study, a shotgun metaproteomic approach was applied to characterize proteins in the VCs collected from chlorophyll maximum, mesopelagic (200 m) and bathypelagic (3000 m) waters in the South China Sea. Abu...

ORGANISM(S): marine sediment bacterium ISA-3146

2022-01-19 | PXD020896 | Pride

Toxicogenomic response of Rhodospirillum rubrum S1H to the model micropollutant triclosan

Aiming at the development of a micropollutant biosensor in the frame of the Micro-Ecological Life Support System Alternative (MELiSSA), a pilot study was initiated to identify triclosan (TCS)-responsive biomarker genes in the MELiSSA carbon-mineralizing microorganism, Rhodospirillum rubrum S1H. TCS ...

ORGANISM(S): Rhodospirillum rubrum

2010-05-19 | E-GEOD-16189 | biostudies-arrayexpress

Dynamic responses of primary human bronchial epithelial cells to influenza virus, viral RNA and interferon-beta

We defined the major transcriptional responses in primary human bronchial epithelial cells (HBECs) after either infection with influenza or treatment with relevant ligands. We used four different strategies, each highlighting distinct aspects of the response. (1) cells were infected with the wild-t...

ORGANISM(S): Homo sapiens

2010-04-13 | E-GEOD-19392 | biostudies-arrayexpress

Human plasma LC-MS/MS from children with bacterial and viral infections

LC-MS/MS proteomic profiling was performed on children with bacterial and viral infections using plasma samples. Protein biomarkers indiciative of bacterial or viral infection were identified.

ORGANISM(S): Homo sapiens (Human)

2023-11-14 | PXD041960 | Pride

Viral Bacterial Plasma Humans Lc-ms/ms

Liver profiles of mid-lactating goats using Agilent Array

Dairy ruminants are often fed high grain diets to meet the energy demand for high milk production. As a result, body metabolism occurs change and milk quality was suppression. As the vital organ that controls metabolism, the liver contributes to the input of substrate precursors to the mammary glan...

ORGANISM(S): Capra hircus

2014-08-29 | E-GEOD-50448 | biostudies-arrayexpress

Viral pIC-pocketing: RSV sequestration of eIF4F Initiation Complexes into bi-phasic biomolecular condensates

Orthopneumoviruses characteristically form membrane-less cytoplasmic inclusion bodies (IBs) wherein RNA replication and transcription occur. Herein, we report a strategy whereby the orthopneumoviruses sequester various components of the eiF4F Initiation Complex machinery into viral IBs to facilitate...

ORGANISM(S): Homo sapiens (Human)

2024-02-02 | PXD041843 | Pride

Respiratory syncytial virus Eif4f complex Inclusion bodies

Effect of temperature and time on RNA detection by RT-qPCR in rodent tissue and blood samples stored in MagMAX™ Lysis/Binding Solution Concentrate: Considerations for RNA detection in specimens stored under suboptimal conditions.

Not available

S-EPMC12232495 | biostudies-literature

Melaleuca alternifolia concentrate inhibits in vitro entry of influenza virus into host cells.

Not available

S-EPMC6270578 | biostudies-literature

Detection of Human Viruses from wastewater sewage extracts

Sewage samples were collected and concentrated for Human and animal viruses. Viruses were cultured on Buffalo Green Monkey Cells (BGMK) and their genomic DNA/RNA were extracted and labeled with Cy3 and Cy5 respectively. Labeled DNA/RNA were hybridized unto the array and signals generated were analyz...

ORGANISM(S): Viruses

2008-04-18 | E-GEOD-11195 | biostudies-arrayexpress

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246 Results

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