Viral escape - OmicsDI

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Genomics (173)
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Organisms

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Organisms

Homo sapiens (28)
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Sus scrofa (2)
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CHEBI ID

CHEBI:75461 (1)
CHEBI:75353 (1)
CHEBI:16112|CHEBI:16384|CHEBI:75489|CHEBI:75491 (1)
CHEBI:1945|CHEBI:75499|CHEBI:75500 (1)
CHEBI:75432|CHEBI:75433 (1)
CHEBI:75559|CHEBI:75564 (1)
CHEBI:75515 (1)
CHEBI:75438 (1)
CHEBI:75556|CHEBI:31227 (1)
CHEBI:75554 (1)
CHEBI:75523|CHEBI:75532 (1)
CHEBI:75520 (1)
CHEBI:75518|CHEBI:18330 (1)
CHEBI:75516|unknown (1)
CHEBI:75517 (1)
CHEBI:75493|CHEBI:75496|CHEBI:75497 (1)
CHEBI:75467 (1)
CHEBI:75428 (1)
CHEBI:75368 (1)
CHEBI:75413 (1)
CHEBI:75398 (1)
CHEBI:75396 (1)
CHEBI:75395 (1)
CHEBI:75386 (1)
CHEBI:75420 (1)
CHEBI:75349|CHEBI:75353 (1)
CHEBI:75440 (1)
CHEBI:75435 (1)
CHEBI:75509 (1)
CHEBI:75514 (1)

Metabolite Name

UPLC_UV_signal_050 (1)
UPLC_UV_signal_048 (1)
UPLC_UV_signal_044 (1)
UPLC_UV_signal_042 (1)
UPLC_UV_signal_039 (1)
UPLC_UV_signal_038 (1)
UPLC_UV_signal_037 (1)
UPLC_UV_signal_036 (1)
UPLC_UV_signal_035 (1)
UPLC_UV_signal_033 (1)
UPLC_UV_signal_032 (1)
UPLC_UV_signal_031 (1)
UPLC_UV_signal_030 (1)
UPLC_UV_signal_028 (1)
UPLC_UV_signal_027 (1)
UPLC_UV_signal_026 (1)
UPLC_UV_signal_025 (1)
UPLC_UV_signal_024 (1)
UPLC_UV_signal_023 (1)
UPLC_UV_signal_022 (1)
Tricin 7-O-[sinapoyl]-glucoside 4'-O-glucoside (1)
UPLC_UV_signal_019 (1)
UPLC_UV_signal_018 (1)
UPLC_UV_signal_016 (1)
UPLC_UV_signal_015 (1)
UPLC_UV_signal_014 (1)
Agmatine derivative (1)
P-coumaric acid derivative (1)
Sinapic acid derivative 3 (1)
UPLC_UV_signal_011 (1)

IsPrivate

False (2)

First Public Date

2023 (27)
2025 (26)
2026 (18)
2022 (17)
2021 (15)
2024 (14)
2019 (9)
2018 (7)
2020 (5)
2016 (5)
2017 (4)
2015 (3)
2014 (2)
2013 (2)

Classification

viruses (13)
bacteria (3)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (44)
RNA-seq of coding RNA (11)
Unknown experiment type (3)
ChIP-seq (3)
ChIP-chip by tiling array (2)
Cell line - High-throughput sequencing (2)
Methylation profiling by array (2)
ChIP-chip by array (1)
Genotyping by array (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (388)
2021 (299)
2023 (247)
2025 (214)
2024 (192)
2020 (147)
2019 (121)
2018 (117)
2016 (109)
2015 (108)
2014 (101)
2017 (98)
2013 (71)
2012 (67)
2010 (62)
2011 (59)
2008 (54)
2009 (42)
2007 (39)
2026 (27)
2006 (25)
2005 (20)
2004 (9)
2002 (7)
2003 (6)
2000 (4)
1999 (4)
2001 (3)
1998 (3)
1997 (1)

Lab affiliation

Associate Investigator, Metabolic Regulation of Cell Fate, inStem (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Cambridge, UK (1)
China agricultural university, preventive veterinary medicine (1)
Civil Aviation Medicine Center, Civil Aviation Administration of China (1)
Department of Biochemistry Center for Biomedical Mass Spectrometry Boston University School of Medicine (1)
Department of Microbiology at NYU Grossman School of Medicine. (1)
Department of Molecular Biology, Princeton University, USA (1)
Discovery Proteomics Facility, Target Discovery Institute,University of Oxford (1)
Faculty of Medicine, Institute of Biochemistry II, Goethe University, 60590 Frankfurt am Main, Germany. Frankfurt Cancer Institute, Goethe University, 60596 Frankfurt am Main, Germany. Cardio-Pulmonary Institute, Goethe University, 60590 Frankfurt am Main, Germany (1)
Hannover Medical School (1)
Institute of Molecular Genetics of the Czech Academy of Sciences (1)
Laboratory MIVEGEC UMR5290 (CNRS IRD University Montpellier), French National Center for Scientific Research (CNRS), Montpellier, France (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 Albert.Sickmann@isas.de www.isas.de (1)
Nuffield Department Medicine, University of Oxford, Oxford, OX3 7BN, United Kingdom. (1)
Technical University Munich, Faculty of Medicine, Institute of Virology, Viral Immunopathology, Schneckenburger Str. 8, D-81675 Munich, Germany (lab head) (1)
Utrecht University (1)

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Untargeted metabolomics reveals bovine viral diarrhea virus infection reprogram host nucleotide and amino acid metabolism in MDBK Cells

Bovine viral diarrhea virus (BVDV) is a highly adapted intracellular parasite that depends entirely on the host cell's metabolic resources and energy for the synthesis of viral components. However, the mechanisms by which BVDV remodels host lipid metabolism remain unclear. In this study, we explo...

2025-10-12 | MTBLS13126 | MetaboLights

Swapped genetic code block viral infections and gene transfer

Removing cellular transfer RNAs (tRNAs), making their cognate codons unreadable, creates a genetic firewall that prevents viral replication and horizontal gene transfer. However, numerous viruses and mobile genetic elements encode parts of the translational apparatus, including tRNAs, potentially re...

ORGANISM(S): Escherichia Coli (ncbitaxon:562)

2022-07-08 | MSV000089854 | MassIVE

Virus-induced lncRNA-BTX allows viral replication by regulating intracellular translocation of DHX9 and ILF3 to induce innate escape

ORGANISM(S): Mus Musculus

2023-08-10 | PXD044507 |

CD8⁺ Cytotoxic T Lymphocyte Responses and Viral Epitope Escape in Acute HIV-1 Infection.

Not available

S-EPMC6145043 | biostudies-literature

Viral nucleases reveal an mRNA degradation-transcription feedback loop in mammalian cells

Gamma-herpesviruses encode a cytoplasmic mRNA-targeting endonuclease, termed SOX, that cleaves the majority of mRNAs within a cell. Cleaved fragments are subsequently degraded by the cellular mRNA degradation machinery. Here, we reveal that mammalian cells respond to this widespread cytoplasmic mR...

ORGANISM(S): Mus musculus

2015-07-23 | E-GEOD-70481 | biostudies-arrayexpress

Constrained Evolutionary Funnels Shape Viral Immune Escape.

Not available

S-EPMC12636330 | biostudies-literature

Fitness costs limit viral escape from cytotoxic T lymphocytes at a structurally constrained epitope.

Not available

S-EPMC533946 | biostudies-literature

Complete mapping of viral escape from neutralizing antibodies.

Not available

S-EPMC5363992 | biostudies-literature

A biophysical model of viral escape from polyclonal antibodies.