Viral rna silencing suppressor

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Unknown (237)
Transcriptomics (174)
Genomics (34)
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Organisms

Homo sapiens (87)
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Organisms

Arabidopsis thaliana (4)
Nicotiana benthamiana (4)
Homo sapiens (3)
Aedes aegypti (1)
Nicotiana tabacum (1)

Repository

biostudies-arrayexpress (179)
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geo (9)
pride (2)
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Tissue

Leaf (2)

Disease

Large cell carcinoma (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
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Infiltrating ductal carcinoma (1)
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Technology Type

Mass Spectrometry (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Illumina HiSeq 2500 (4)
NextSeq 2000 (3)
ScanArray 4000 [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina NovaSeq X (1)
DNBSEQ-G400 (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
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NextSeq 500 (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (26)
2015 (22)
2011 (22)
2013 (21)
2012 (21)
2014 (15)
2009 (10)
2008 (10)
2026 (9)
2016 (8)
2007 (8)
2025 (5)
2021 (5)
2018 (3)
2024 (2)
2023 (1)
2022 (1)
2006 (1)
2005 (1)
2004 (1)
2017 (1)

UNIPROT ID/AC

2711.XP_006464469.1 (1)
2711.XP_006464485.1 (1)
2711.XP_006464486.1 (1)
2711.XP_006465039.1 (1)
2711.XP_006465481.1 (1)
2711.XP_006465554.1 (1)
2711.XP_006465598.1 (1)
2711.XP_006465717.1 (1)
2711.XP_006465764.1 (1)
2711.XP_006466032.1 (1)
2711.XP_006466189.1 (1)
2711.XP_006466240.1 (1)
2711.XP_006466243.1 (1)
2711.XP_006466346.1 (1)
2711.XP_006466347.1 (1)
2711.XP_006466348.1 (1)
2711.XP_006466352.1 (1)
2711.XP_006466586.1 (1)
2711.XP_006467060.1 (1)
2711.XP_006467330.1 (1)
2711.XP_006467511.1 (1)
2711.XP_006468195.1 (1)
2711.XP_006468459.1 (1)
2711.XP_006468477.1 (1)
2711.XP_006468930.1 (1)
2711.XP_006468931.1 (1)
2711.XP_006469038.1 (1)
2711.XP_006469071.1 (1)
2711.XP_006469105.1 (1)
2711.XP_006469136.1 (1)

CHEBI ID

CHEBI:20597 (1)
CHEBI:20598 (1)
CHEBI:75654 (1)
CHEBI:62005 (1)
CHEBI:229469 (1)
CHEBI:234279 (1)
CHEBI:5100 (1)
CHEBI:19226 (1)
CHEBI:60193 (1)
CHEBI:68467 (1)
CHEBI:21440 (1)
CHEBI:19928 (1)
CHEBI:20129 (1)
CHEBI:19228 (1)
CHEBI:20794 (1)
CHEBI:19227 (1)
CHEBI:19289 (1)
CHEBI:191041 (1)
CHEBI:23774 (1)
CHEBI:16020 (1)
CHEBI:40304 (1)
CHEBI:16040 (1)
CHEBI:16335 (1)
CHEBI:17596 (1)
CHEBI:16750 (1)
CHEBI:16704 (1)

Metabolite Name

3-(3-amino-3-carboxypropyl)uridine (1)
5-methoxycarbonylmethyl-2-thiouridine (1)
5-carboxymethyluridine (1)
5-carbamoylmethyluridine (1)
8-oxoguanosine (1)
N6,2'-O-dimethyladenosine (1)
5-methyl-2'-O-methyluridine (1)
5-formylcytidine (1)
Queuosine (1)
5-methoxycarbonylmethyluridine (1)
5-hydroxymethylcytidine (1)
4-methylcytidine (1)
N6-threonylcarbamoyladenosine (1)
2'-O-methylinosine (1)
2'-O-methyluridine (1)
1-methyladenosine (1)
Uridine (1)
2'-O-methylcytidine (1)
N2,N2-dimethylguanosine (1)
Dihydrouridine (1)
Adenosine (1)
Cytidine (1)
7-methylguanosine (1)
Inosine (1)
Guanosine (1)

First Public Date

2021 (4)
2026 (2)
2018 (2)
2017 (2)
2014 (2)
2025 (1)
2024 (1)
2023 (1)
2020 (1)
2019 (1)
2016 (1)
2015 (1)
2013 (1)

Study type

Transcription profiling by array (96)
RNA-seq of non coding RNA (30)
RNA-seq of coding RNA (20)
ChIP-chip by tiling array (7)
ChIP-seq (5)
Methylation profiling by array (5)
Transcription profiling by tiling array (2)
RNAi profiling by array (2)
Other (2)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
RIP-seq (1)
Ribo-seq (1)
CUT&RUN (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2015 (41)
2013 (32)
2021 (31)
2010 (28)
2014 (27)
2012 (27)
2011 (23)
2017 (21)
2025 (19)
2022 (19)
2016 (18)
2008 (16)
2024 (14)
2009 (13)
2020 (13)
2019 (13)
2026 (12)
2023 (12)
2018 (12)
2007 (11)
2005 (6)
2006 (3)
2004 (3)
2003 (1)
2002 (1)

Lab affiliation

Institut de biologie moléculaire des plantes, CNRS UPR2357, Université de Strasbourg, Strasbourg, France (1)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agroproducts, Key Laboratory of Biotechnology in Plant Protection of MOA of China and Institute of Plant Virology, Ningbo University, Ningbo, 315211, China (1)

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Translational repression of viral RNA mediates arbovirus persistence in mosquitoes

Persistent infection of mosquito vectors is essential for the transmission of arboviruses, yet how these viruses produce sufficient progeny without compromising host cell fitness remains unclear. Arbovirus genomes exhibit suboptimal codon usage for both human and mosquito hosts, raising questions...

2026-02-12 | MTBLS12760 | MetaboLights

Viral RNA silencing suppressor and DCL4-associated DRB4 protein interaction is modulated by a viral long non-coding RNA

The expression of the BNYVV silencing suppressor (VSR) p14 protein, together with the production of a viral non-coding RNA (ncRNA3) affects the long-distance movement on natural host Beta species. Through immunoprecipitation of Flag-p14 and expression of TurboID-p14 coupled to mass spectrometry, we ...

ORGANISM(S): Nicotiana benthamiana

2026-09-07 | PXD068024 | Pride

Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNAs by HIV-1

Herein expression trends of host miRNA were measured in CEMx174 lymphocytes infected with HIV-1NL4-3 or derivative strains deficient in Tat RSS activity (RSS) or vif-/vpr (VV), or unexposed to virus. As expected from previous studies, miRNA trends were different in naive and HIV-1 infected cells. ...

ORGANISM(S): Homo sapiens

2011-03-01 | E-GEOD-21892 | biostudies-arrayexpress

chip in silencing suppressor plants or in mirna plants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing

gen107_ptgs - chip in silencing suppressor plants or in mirna plants - What are the genes that are differentially regulated in various tissues derived from silencing suppressor plants or miRNA mutants? - How are the histone modifications and the chromatin structure in miRNA mutants or in silencing s...

ORGANISM(S): Arabidopsis thaliana

2011-08-22 | E-GEOD-24692 | biostudies-arrayexpress

Expression profiling in silencing suppressor plants or in mirna mutants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing

gen107_ptgs - gene profiling in silencing suppressor plants or in mirna mutants - What are the genes that are differentially regulated in various tissues derived from silencing suppressor plants or miRNA mutants? - HcPro, P15, P19, CHS-RNAi (control), were grown on MS solid medium, and tissues were ...

ORGANISM(S): Arabidopsis thaliana

2011-08-22 | E-GEOD-26739 | biostudies-arrayexpress

TMV-derived Small RNAs Reveals Role for Arabidopsis thaliana RNA-dependent RNA Polymerases in Viral siRNA Biogenesis

Using a crucifer-infecting strain of Tobacco Mosaic Virus (TMV-Cg) and Arabidopsis thaliana as a model system, we analyzed the viral small RNA profile in wild-type plants as well as rdr mutants by applying small RNA deep sequencing technology. Over 100,000 TMV-Cg-specific small RNA reads, mostly of...

ORGANISM(S): Youcai mosaic virus

2009-03-24 | E-GEOD-12918 | biostudies-arrayexpress

gene profiling in silencing suppressor plants or in mirna mutants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing

ORGANISM(S): Arabidopsis thaliana

2011-08-22 | E-GEOD-24693 | biostudies-arrayexpress

Cooler temperatures destabilize RNA interference and increase susceptibility of disease vector mosquitoes to viral infection

The impact of global climate change on the transmission dynamics of infectious diseases is the subject of extensive debate. The transmission of mosquito-borne viral diseases is particularly complex, with climatic variables directly affecting many parameters associated with the prevalence of disease ...

ORGANISM(S): Aedes albopictus

2013-08-13 | E-GEOD-46204 | biostudies-arrayexpress

Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing

This SuperSeries is composed of the following subset Series: GSE24692: chip in silencing suppressor plants or in mirna plants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing GSE24693: gene profiling in silencing suppress...

ORGANISM(S): Arabidopsis thaliana

2011-08-22 | E-GEOD-24837 | biostudies-arrayexpress

Biochemical and genetic functional dissection of the P38 viral suppressor of RNA silencing.

Not available

S-EPMC5393175 | biostudies-literature

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