Virology - OmicsDI

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Unknown (49542)
Genomics (982)
Transcriptomics (370)
Proteomics (244)
Metabolomics (34)
Models (8)
Other (3)
Genomic (1)

Organisms

Homo sapiens (217)
Mus musculus (60)
Gallus gallus (13)
Canis lupus familiaris (7)
Chlorocebus sabaeus (6)
Sus scrofa (6)
Drosophila melanogaster (6)
Aedes aegypti (5)
Rattus norvegicus (5)
Arabidopsis thaliana (5)
Zika virus (4)
Saccharomyces cerevisiae (4)
Macaca mulatta (4)
Nicotiana tabacum (4)
Viruses (3)
Triticum aestivum (3)
Nicotiana benthamiana (3)
Severe acute respiratory syndrome-related coronavirus (2)
Emiliania huxleyi (2)
mixed sample (2)
Mesocricetus auratus (2)
Bos taurus (2)
Anas platyrhynchos (2)
Influenza A virus (A/Jena/5258/2009(H1N1)) (1)
JC polyomavirus (1)
Rhinolophus ferrumequinum (1)
Tick-borne encephalitis virus (1)
Myodes glareolus (1)
Mayaro virus (1)
unidentified influenza virus (1)

Organisms

Homo sapiens (223)
Mus musculus (113)
Influenza A virus (13)
Severe acute respiratory syndrome coronavirus 2 (11)
Gallus gallus (10)
Sus scrofa (8)
Mesocricetus auratus (6)
Canis lupus familiaris (6)
Human immunodeficiency virus 1 (5)
Oryza sativa (5)
Leptospira interrogans serovar Canicola (4)
human gammaherpesvirus 4 (4)
Lysinibacillus sphaericus (4)
Leptospira interrogans (4)
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (3)
Chlamydia psittaci (3)
Monkeypox virus (3)
Mycolicibacterium smegmatis (3)
Aedes aegypti (3)
gut metagenome (3)
Escherichia coli (3)
feces metagenome (3)
Staphylococcus aureus (3)
Arabidopsis thaliana (3)
Nicotiana benthamiana (3)
hydrogen-producing bacterial consortium (2)
Penicillium chrysogenum KF-25 (2)
Magnetospirillum sp. ME-1 (2)
Lablab purpureus (2)
Trichophyton rubrum (2)

Repository

ENA (961)
biostudies-arrayexpress (372)
pride (200)
iProX (37)
MetaboLights (33)
geo (14)
EGA (9)
BioModels (8)
MassIVE (6)
dbGaP (1)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (80)
Fibroblast (23)
Epithelial cell (21)
Macrophage (8)
Lung (7)
Leaf (6)
Primary cell (6)
Hepatocyte (6)
Dendritic cell (5)
Permanent cell line cell (5)
Skin (4)
Liver (4)
Neuroblast (3)
HeLa cell (3)
Whole body (3)
Kidney (3)
Monocyte (3)
Trophoblast cell (2)
Microglial cell (2)
Placenta (2)
Keratinocyte (2)
Diploid cell (2)
Plant cell (2)
Cell suspension culture (2)
Blood plasma (2)
Blood cell (2)
Organism or virus or viroid (1)
Long bone (1)
Mesenchymal stem cell of adipose (1)
Tracheal epithelium (1)

Disease

Disease free (11)
Influenza (6)
Herpes simplex (4)
Acute gastroenteritis (2)
Norovirus gastroenteritis (2)
Zika fever (2)
Hepatitis C (2)
Human cytomegalovirus infection (2)
Skin cancer (2)
Severe acute respiratory syndrome (2)
Zika virus congenital syndrome (2)
Neuroblastoma (2)
COVID-19 (2)
Mock infection (1)
Measles virus infected (1)
Alzheimer's disease (1)
HIV (1)
Papillary thyroid carcinoma (1)
Not infected (1)
Viral myocarditis (1)
Cancer (1)
Osteosarcoma (1)
Prostate cancer (1)
SINV infection (1)
Lung cancer (1)
Breast carcinoma (1)
Not Available (1)
Lymphocytic choriomeningitis (1)
Fever (1)
Tick borne (1)

Technology Type

Mass Spectrometry (200)
Shotgun proteomics (96)
Affinity purification coupled with mass spectrometry proteomics (48)
Bottom-up proteomics (39)
Data-dependent acquisition (31)
Mass spectrometry (25)
Gel-based experiment (16)
Top-down proteomics (13)
Mass spectrometry assay (7)
SWATH MS (4)
Affinity proteomics (3)
ILLUMINA, Illumina HiSeq 2000 (2)
Data-independent acquisition (2)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
HDMSE (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

NextSeq 500 (14)
Illumina NovaSeq 6000 (13)
Illumina HiSeq 2500 (8)
Illumina HiSeq 2000 (6)
Illumina MiSeq (4)
Illumina HiSeq 1500 (4)
NextSeq 550 (4)
Illumina Genome Analyzer IIx (3)
MA900, Sony (2)
10x Chromium Controller (2)
Sequel (2)
G2565AA DNA microarray scanner [Agilent] (2)
NextSeq 2000 (2)
HIVE computer cluster (1)
Bio-Rad T100 Thermocycler (1)
Local workstation (1)
Chromium Single Cell 5' Library & Gel Bead Kit v2 (1)
FLOQSwab (Copan) (1)
Bioinformatics Core Facility, Centre for Molecular Medicine, CEITEC Masaryk University (1)
Cell culture laboratory, BSL-3 lab (1)
Library preparation kit (1)
RNA isolation laboratory (1)
BSL-3 laboratory (1)
Desktop (1)
Microcentrifuge (1)
Illumina Hiseq 2500 (1)
Affymetrix GeneChip Scanner 3000 7G (1)
ScanArray scanning hardware (1)
418 [Affymetrix] (1)
Illumina Genome Analyzer II (1)

Publication Date

2013 (61)
2012 (56)
2025 (54)
2024 (52)
2022 (46)
2026 (42)
2015 (37)
2011 (35)
2021 (34)
2014 (32)
2010 (32)
2023 (31)
2020 (26)
2019 (24)
2018 (21)
2016 (20)
2008 (17)
2017 (15)
2007 (10)
2009 (5)
2005 (4)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:16335 (5)
CHEBI:16750 (4)
CHEBI:15428 (4)
CHEBI:16865 (4)
CHEBI:15891 (4)
CHEBI:16704 (4)
CHEBI:17191 (4)
CHEBI:17596 (4)
CHEBI:35619 (3)
CHEBI:27389 (3)
CHEBI:20794 (3)
CHEBI:19227 (3)
CHEBI:20392 (3)
CHEBI:15611 (3)
CHEBI:17126 (3)
CHEBI:22660 (3)
CHEBI:18186 (3)
CHEBI:26986 (3)
CHEBI:16811 (3)
CHEBI:28300 (3)
CHEBI:20607 (3)
CHEBI:17802 (3)
CHEBI:17562 (3)
CHEBI:16977 (3)
CHEBI:25017 (3)
CHEBI:15741 (3)
CHEBI:28044 (3)
CHEBI:37024 (3)
CHEBI:15727 (3)
CHEBI:17196 (3)

Metabolite Name

Glycine (5)
Citrulline (5)
Adenosine (4)
Valine (4)
Pyroglutamic acid (4)
Ornithine (4)
Malic acid (4)
Serine (4)
Threonine (4)
Sarcosine (4)
Proline (4)
Phenylalanine (4)
Isoleucine (4)
2'-O-methyluridine (3)
7-methylguanosine (3)
Glucaric acid (3)
Anserine (3)
Histidine (3)
Leucine (3)
Norleucine (3)
2'-O-methylcytidine (3)
Oxalic acid (3)
Dimethylglycine (3)
Uridine (3)
Inosine (3)
Guanosine (3)
Cytidine (3)
L-alanine (3)
1-methyladenosine (3)
Propionylcarnitine (3)

IsPrivate

False (8)

Submitter Keywords

Not Peer Reviewed (7)

First Public Date

2025 (118)
2014 (116)
2024 (107)
2022 (101)
2026 (97)
2023 (95)
2021 (79)
2020 (71)
2019 (46)
2017 (37)
2016 (24)
2013 (24)
2018 (20)
2015 (20)
2012 (3)
2010 (2)
2011 (1)

Classification

viruses (82)
bacteria (43)
fungi (3)
helminths (1)
protozoa (1)

Modelling Approach

Constraint-based model (7)
Ordinary differential equation model (1)

Study type

Transcription profiling by array (230)
RNA-seq of coding RNA (53)
RNA-seq of non coding RNA (17)
Other (12)
ChIP-seq (7)
RNA-seq of coding RNA from single cells (7)
Cell line - High-throughput sequencing (6)
Ribo-seq (5)
DNA-seq (4)
Genotyping by high throughput sequencing (4)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
RNA-seq of total RNA (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Plant - High-throughput sequencing (2)
High-throughput sequencing (2)
RNAi profiling by array (2)
Transcription profiling by SAGE (1)
Differential (1)
CLIP-Seq (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (4974)
2021 (4788)
2023 (3972)
2020 (3600)
2025 (3229)
2024 (2927)
2019 (2486)
2018 (2289)
2015 (2219)
2017 (2202)
2016 (2166)
2014 (1984)
2012 (1637)
2013 (1626)
2011 (1492)
2010 (1336)
2009 (966)
2008 (847)
2007 (816)
2006 (663)
2005 (645)
2004 (523)
2003 (439)
2026 (403)
2002 (380)
2001 (356)
2000 (351)
1999 (309)
1998 (264)
1997 (13)

Lab affiliation

Institute of Virology - Viral Immunopathology, Faculty of Medicine, Technical University Munich (7)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (7)
Immunopathology of Virus Infections Institute of Virology Technical University of Munich Munich, Germany (4)
Institute of Virology, Technical University of Munich, Munich, Germany. (4)
Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (4)
Technical University Munich, Faculty of Medicine, Institute of Virology, Viral Immunopathology, Schneckenburger Str. 8, D-81675 Munich, Germany (4)
Division of Virology, Department of Pathology, University of Cambridge, UK (3)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China (3)
Harald zur Hausen Institute of Virology, Uniklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany. (2)
Institute of Medical Virology, University of Zurich (2)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Im Neuenheimer Feld 344, Heidelberg, Germany (2)
Division of Virology, Department of Pathology, University of Cambridge, Cambridge, UK (2)
Leibniz Institute for Virology (LIV), Germany; Centre for Structural Systems Biology (CSSB), Germany; University of Siegen, Germany; Deutsches Elektronen-Synchrotron (DESY), Germany; European XFEL GmbH, Germany. (2)
Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (2)
Immunopathology of Virus Infections, Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (2)
Technical University of Munich, School of Medicine, Institute of Virology, Munich, Germany (2)
Institute of Medical Virology, University of Zurich, Switzerland (2)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems,Germany (2)
Institute of Virology, University of Cologne Medical Faculty and University Hospital Cologne, Cologne, Germany (2)
Princeton University (2)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (2)
Institute of Virology, Technical University of Munich, Munich 81675, Germany (2)
Cambridge Institute for Medical Research, University of Cambridge (2)
Cambridge Institute for Medical Research, University of Cambridge, CB2 0XY, UK (1)
Immunopathology of Virus Infections Institute of Virology Technical University of Munich Schneckenburgerstr. 8 D-81675 Munich, Germany tel: +49 (0) 89 4140 9270 (1)
Department of Virology and Immunology, Institute of Microbiology and Biotechnology, Maria Curie-Sklodowska University in Lublin, Poland (1)
State Key Laboratory of Virology and Hubei Province Key Laboratory of Allergy and Immunology, Institute of Medical Virology, TaiKang Center for Life and Medical Sciences, TaiKang Medical School, Wuhan University (1)
Systems Arbovirology - Leibniz Institute for Experimental Virology (1)
SYBIOMA KULeuven Leuven Belgium (1)
Institute of Medical Virology University of Zürich Winterthurerstrasse 190 8057 Zürich Switzerland (1)

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