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Unknown (24450)
Genomics (791)
Transcriptomics (635)
Proteomics (153)
Clinical (25)
Other (16)
Metabolomics (16)
Genomic (13)
Methylation profiling (4)
Models (1)

Organisms

Homo sapiens (286)
Mus musculus (261)
Danio rerio (32)
Rattus norvegicus (25)
Drosophila melanogaster (17)
Arabidopsis thaliana (12)
Gallus gallus (6)
Saccharomyces cerevisiae (5)
Bacillus subtilis subsp. subtilis str. 168 (5)
Sus scrofa (5)
Escherichia coli K-12 (4)
Heliconius melpomene (3)
Macaca mulatta (3)
Xenopus laevis (2)
Schistosoma mansoni (2)
Zea mays (2)
Ptomaphagus hirtus (2)
Drosophila mojavensis (2)
Spalax carmeli (1)
Larimichthys crocea (1)
Nannospalax galili (1)
Morone saxatilis (1)
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Litomosoides sigmodontis (1)
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Gasterosteus aculeatus (1)
Brassica napus (1)

Organisms

Homo sapiens (184)
Mus musculus (177)
Danio rerio (25)
Rattus norvegicus (15)
Drosophila melanogaster (8)
unidentified (6)
Mycobacterium tuberculosis (5)
human metagenome (5)
Ictidomys tridecemlineatus (4)
Macaca fascicularis (4)
Arabidopsis thaliana (4)
Strix aluco (3)
Schizosaccharomyces pombe (3)
Pseudomonas aeruginosa (3)
Anableps anableps (2)
Alatina alata (2)
Vanessa cardui (2)
Astyanax mexicanus (2)
Nothobranchius furzeri (2)
Gekko japonicus (2)
Cyprinus carpio (2)
Apis mellifera (2)
Cavia porcellus (2)
Macaca mulatta (2)
Callithrix jacchus (2)
Saccharomyces cerevisiae (2)
Gallus gallus (2)
Canis lupus familiaris (2)
Staphylococcus aureus (2)
Sus scrofa (2)

Repository

ENA (738)
geo (400)
biostudies-arrayexpress (289)
pride (100)
MassIVE (28)
EGA (17)
MetaboLights (15)
dbGaP (13)
iProX (13)
jPOST (8)
PanoramaPublic (5)
BioModels (1)
EVA (1)
GNPS (1)

Tissue

Retina (27)
Cell culture (11)
Tear (8)
Eye (7)
Epithelial cell (6)
Vitreous humor (5)
Brain (4)
Retinal cell (4)
Whole body (4)
Iris (3)
Cerebrospinal fluid (2)
Choroid (2)
Conjunctiva (2)
Cornea (2)
Heart (2)
Sclera (2)
Stem cell (2)
Urine (2)
Anterior chamber of the eye (1)
Aqueous humor of eyeball (1)
Blood cell (1)
Blood plasma (1)
Blood serum (1)
Cell suspension culture (1)
Compound eye (1)
Embryonic stem cell (1)
Endothelial cell (1)
Extracellular vesicle (1)
Ganglionic layer of retina (1)
Hippocampal pyramidal neuron (1)

Disease

Colorectal Neoplasms (11)
Retinal degeneration (8)
Adenoma (7)
Age related macular degeneration (6)
Disease free (3)
Glaucoma (3)
Retinoblastoma (3)
Colorectal cancer (2)
Aniridia (2)
Diabetes mellitus (2)
Bordetella pertussis inoculated (1)
Glioblastoma (1)
Control (1)
Gastroenterology (1)
Multiple Sclerosis (1)
Malignant neoplasm of small intestine, unspecified (1)
Colorectal Cancer (1)
Neoplasms (1)
Birdshot chorioretinopathy (1)
Brain glioblastoma multiforme (1)
Brain ischemia (1)
Cataract (1)
Diabetic retinopathy (1)
Eye disease (1)
Inflammation (1)
Lattice corneal dystrophy (1)
Myopia (1)
Open-angle glaucoma (1)
Proliferative diabetic retinopathy (1)
Retinal degeneration (1)

Technology Type

Mass Spectrometry (100)
Shotgun proteomics (44)
Bottom-up proteomics (25)
Data-dependent acquisition (18)
Data-independent acquisition (13)
SWATH MS (9)
Top-down proteomics (8)
Mass spectrometry (7)
Gel-based experiment (7)
Affinity purification coupled with mass spectrometry proteomics (6)
NMR spectroscopy (4)
Mass spectrometry assay (4)
SRM/MRM (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Human Cardio Metabochip (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina (1)
Illumina MiSeq (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Illumina HiSeq 4000 (5)
Illumina HiSeq 2500 (4)
GC MS (4)
LTQ Orbitrap Velos (4)
Affymetrix GeneChip(R) HT Scanner (3)
NextSeq 500 (3)
GC-MS (3)
Orbitrap Fusion Lumos (3)
Q Exactive (3)
Scann Array Express (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion (2)
BD FACSARIA III (1)
Fluidigm C1 (1)
Affymetrix GeneChip Scanner 3000 7G (1)
BAS-1800 [FUJIFILM] (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
6220 Time-of-Flight LC/MS (1)
6495C Triple Quadrupole LC/MS (1)
6560 Q-TOF LC/MS (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap (1)

Publication Date

2025 (102)
2026 (84)
2023 (75)
2024 (71)
2021 (58)
2010 (51)
2022 (45)
2016 (40)
2011 (38)
2013 (37)
2015 (35)
2014 (34)
2020 (29)
2008 (28)
2019 (27)
2017 (25)
2018 (18)
2007 (18)
2012 (15)
2009 (13)
2006 (6)
2004 (3)
2005 (1)
2003 (1)

CHEBI ID

CHEBI:17822 (5)
CHEBI:15891 (5)
CHEBI:16856 (5)
CHEBI:17268 (5)
CHEBI:15428 (5)
CHEBI:18012 (5)
CHEBI:16737 (5)
CHEBI:60645 (4)
CHEBI:17754 (4)
CHEBI:16704 (4)
CHEBI:16135 (4)
CHEBI:17750 (4)
CHEBI:18132 (4)
CHEBI:15741 (4)
CHEBI:32816 (4)
CHEBI:16919 (4)
CHEBI:15354 (4)
CHEBI:17368 (4)
CHEBI:48430 (3)
CHEBI:10642 (3)
CHEBI:17126 (3)
CHEBI:27570 (3)
CHEBI:30751 (3)
CHEBI:18186 (3)
CHEBI:17234 (3)
CHEBI:15676 (3)
CHEBI:16530 (3)
CHEBI:16870 (3)
CHEBI:30794 (3)
CHEBI:28044 (3)

Metabolite Name

Creatinine (5)
Taurine (4)
Serine (4)
Glycine (4)
Myo-inositol (4)
L-leucine (3)
L-isoleucine (3)
Ergothioneine (3)
Uridine (3)
Sarcosine (3)
Inosine (3)
Hypoxanthine (3)
Hypotaurine (3)
Allantoin (3)
Choline (3)
Creatine (3)
L-alanine (3)
Glutathione (3)
Glycerol (3)
Fumaric acid (3)
L-valine (3)
L-asparagine (3)
L-proline (3)
N-Undecanoylglycine (3)
Lysine (3)
L-methionine (3)
2,4-Dinitroanisole (2)
1-octadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine (2)
Cuprizone (2)
Resacetophenone (2)

First Public Date

2025 (120)
2026 (102)
2024 (89)
2023 (84)
2021 (63)
2014 (60)
2020 (43)
2022 (39)
2019 (31)
2017 (29)
2013 (27)
2016 (23)
2018 (16)
2015 (11)
2012 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (12)
Not provided (5)
Recruiting (4)
Not yet recruiting (2)
Suspended (1)
Withdrawn (1)

Lab affiliation

Center for Translational Vision Research, Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; Department of Physiology and Biophysics, Department of Chemistry, Department of Molecular Biology and Biochemistry; University of California, Irvine, Irvine, CA, 92697, USA (3)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (3)
Boston Children's Hospital (2)
Department of Ophthalmology, LMU University Hospital, LMU Munich, Munich, Germany (2)
School of Optometry, The Hong Kong Polytechnic University, Hong Kong (2)
University of Houston, Houston, TX 77204 (2)
1. Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong 2. Centre for Eye and Vision Research (CEVR), 17W Hong Kong Science Park, Hong Kong 3. Research Centre for SHARP Vision (RCSV), The Hong Kong Polytechnic University, Hong Kong (1)
1. Gavin Herbert Eye Institute - Center for Translational Vision Research, Department of Ophthalmology, University of California Irvine, CA, 92697, USA 2. Department of Physiology and Biophysics, School of Medicine, University of California Irvine, CA (1)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
1Brunason Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; 2Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA, 92697, USA; 3Department of Chemistry, University of California, Irvine, Irvine, CA, 92697, USA; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, 92697, USA (1)
1Center for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, Virginia, USA (1)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
Aarhus University (1)
Aarhus University, Department of Molecular Biology and Genetics (1)
Associate Professor, University of Maryland College Park, MD 20742 (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
Cedars-Sinai Medical Center (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hung Hom, Hong Kong. (1)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (1)
Dame Kate Campbell Fellow Department of Surgery| Melbourne Medical School Department of Anatomy and Physiology| School of Biomedical Sciences Faculty of Medicine, Dentistry and Health Sciences Medical Building (#181), Grattan Street The University of Melbourne, Victoria 3010 Australia P: +61 3 9035 5464 E: apebay@unimelb.edu.au W: https://medicine.unimelb.edu.au/school-structure/surgery W: https://biomedicalsciences.unimelb.edu.au/departments/anatomy-and-physiology (1)
Department Functional Proteomics Medizinisches Proteom-Center Ruhr-University Bochum Building ProDi Gesundheitscampus 4 44780 Bochum Germany (1)
Department of Biological Chemistry, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Department of Biological Sciences University of Delaware Newark, DE, USA. (1)
Department of Biological Sciences, University of Alberta (1)
Department of Biology Wanek School of Natural Sciences High Point University 1 N University Pkwy High Point, NC 27368 USA (1)
Department of Cardiology, Chengdu Third People’s Hospital/Affiliated Hospital of Southwest Jiaotong University, Chengdu, China. (1)
Department of Chemical Physiology and Biochemistry Oregon Health and Science University Portland, OR 97239 USA (1)
Department of Molecular Genetics, Weizmann Institute of Science; Rehovot, 7610001, Israel (1)

Keyword

Colonoscopy (6)
Screening (4)
Endocuff (3)
Adenoma detection rate (3)
Endocuff Vision (2)
Fecal Occult Blood Test (FOBT) (1)
Quality improvement cycles (1)
Nearinfrared (1)
IRDye800 (1)
Light-CT Scanner (1)
Tumour detection (1)
Hyperspectral imaging (1)
Colonic Adenoma (1)
Health promotion (1)
G-eye (1)
Fluorescence (1)
Antibody (1)
Artificial Intelligence (1)
Artificial intelligence (1)
ARC Endocuff Vision (1)
Perfusion (1)
Bowel cancer screening (1)
Endoscopy (1)
Adenoma Detection Rate (1)
Prevention (1)
Adenomas (1)
Anastomosis (1)
Mass screening (1)
Bowel cancer (1)
Comorbidity (1)

IsPrivate

False (1)

Classification

bacteria (23)
helminths (2)
viruses (1)
fungi (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (192)
RNA-seq of coding RNA (44)
Interventional (21)
Other (14)
RNA-seq of non coding RNA (7)
Unknown experiment type (6)
Comparative genomic hybridization by array (3)
Observational (3)
Cell line - Single-cell sequencing (2)
RIP-chip by array (2)
High-throughput sequencing (2)
ChIP-seq (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Baseline (1)
Human - High-throughput sequencing (1)
Translation profiling (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
CLIP-seq (1)
ATAC-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Observational patient registry (1)

Release Date

2025 (3174)
2022 (2950)
2023 (2871)
2024 (2637)
2021 (2467)
2020 (1906)
2019 (1443)
2018 (1255)
2017 (1068)
2016 (888)
2015 (807)
2014 (646)
2026 (459)
2013 (417)
2011 (358)
2012 (356)
2010 (316)
2009 (226)
2008 (199)
2007 (119)
2006 (46)
2005 (34)
2004 (31)
2003 (17)
2002 (16)
2001 (13)
2000 (8)
1999 (6)
1998 (5)
1997 (1)

Location

United Kingdom (4)
United States (4)
France (3)
Italy (2)
Germany (2)
Saudi Arabia (1)
India (1)
Hong Kong (1)
Ireland (1)
Greece (1)
Argentina (1)
Australia (1)
Japan (1)
Spain (1)
Canada (1)
China (1)
Netherlands (1)

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Peripheral refraction and spherical aberration profiles with single vision, bifocal and multifocal soft contact lenses.

Not available

S-EPMC6951842 | biostudies-literature

Diagnosing Colour Vision Deficiencies Using Eye Movements (Without Dedicated Eye-Tracking Hardware).

Not available

S-EPMC12565516 | biostudies-literature

Not available

S-EPMC12520030 | biostudies-literature

Reactivating the phototransduction cascade with a mutation agnostic gene therapy preserves vision in Rod-Cone Dystrophies

PRJNA1209861 | ENA

Unexpected vision performance with photochromic contact lenses in normal and low light conditions: An analysis of two randomized trials.

Not available

S-EPMC10104794 | biostudies-literature

Vision Restoration by Optogenetic Therapy and Developments Toward Sonogenetic Therapy.

Not available

S-EPMC8762673 | biostudies-literature

Advancing vision standards in aviation: Embracing evidence-based approaches.

Not available

S-EPMC12439511 | biostudies-literature

Gene regulation in brain, eye and heart of sighted C3H mice

It is unclear what role vision plays in guiding mouse behaviour, since the mouse eye is of comparably low optical quality, and mice are considered to rely primarily on other senses. All C3H substrains are homozygous for the Pde6b(rd1) mutation and get blind by weaning age. To study the impact of the...

ORGANISM(S): Mus musculus

2010-05-23 | E-GEOD-7855 | biostudies-arrayexpress

RNA-seq of Heliconius melpomene adult male and female heads (eye+brain), antennae, mouthparts (labial palps+proboscis) and legs

The experiment examines expression of mRNAs in adult tissue for the purpose of identifying differentially expressed genes in each tissue. The goal of the experiment is to identify vision-related genes and their relative expression levels as quantified by FPKMs.

ORGANISM(S): Heliconius melpomene

2018-03-31 | E-MTAB-6249 | biostudies-arrayexpress

Retinal Contributions to Vision Loss in Albinism

PRJNA1083060 | ENA