Walter B B - OmicsDI

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Unknown (3415)
Transcriptomics (211)
Proteomics (148)
Genomics (120)
Metabolomics (13)
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Models (5)

Organisms

Homo sapiens (183)
Mus musculus (109)
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Plasmodium falciparum 3D7 (5)
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Giardia lamblia ATCC 50803 (3)
Pseudotsuga menziesii (3)
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Equus caballus (2)
cellular organisms (1)
unidentified influenza virus (1)
human oral metagenome (1)
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Penicillium chrysogenum (1)
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Populus maximowiczii x Populus nigra (1)
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Plasmodium (1)
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Organisms

Mus musculus (49)
Homo sapiens (17)
Francisella tularensis (1)
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Macaca mulatta (1)

Repository

biostudies-arrayexpress (223)
pride (130)
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Technology Type

Mass Spectrometry (131)
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ESI (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Affymetrix GeneChip Scanner 3000 7G (9)
Q Exactive (6)
Illumina HiSeq 2500 (4)
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LTQ Orbitrap Velos (3)
Liquid Chromatography MS - negative - hilic (3)
Affymetrix GeneChip(R) HT Scanner (2)
GenePix 4000B [Axon Instruments] (2)
Illumina NovaSeq 6000 (2)
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Agilent G2565BA Microarray Scanner System (Agilent Technologies, Santa Clara, CA) (1)
Tecan HS4800 hybridization station (Tecan, Vienna, Austria) (1)
The Agilent C scanner (1)
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Gene Titan (1)
Affymetrix Gene-Chip Scanner-3000-7G (1)
Genechip Hybridization Oven-645 (Affymetrix); Geneechip Fluidics Station-450 (Affymetrix) (1)
Maxwell 16 Instrument (Cat. #AS2000, Promega, Madison, WI) (1)
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Illumina MiSeq (1)
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Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)

Publication Date

2015 (31)
2014 (31)
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2016 (28)
2013 (28)
2023 (27)
2012 (25)
2010 (23)
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2011 (15)
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2008 (10)
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2018 (8)
2017 (7)
2009 (5)
2006 (3)
2005 (3)
2004 (1)

UNIPROT ID/AC

F1LV89 (1)
F1M9C3 (1)
P07522 (1)
P11345 (1)
P16104 (1)
P21708 (1)
P27361 (1)
P35226 (1)
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P47197 (1)
P50904 (1)
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A0JLQ7 (1)
A0PJC8 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:16708 (5)
CHEBI:15603 (3)
CHEBI:15676 (3)
CHEBI:15971 (3)
CHEBI:16015 (3)
CHEBI:16467 (3)
CHEBI:16566 (3)
CHEBI:16704 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:17203 (3)
CHEBI:17368 (3)
CHEBI:17562 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17775 (3)
CHEBI:17895 (3)
CHEBI:17992 (3)
CHEBI:18012 (3)
CHEBI:18019 (3)
CHEBI:18107 (3)
CHEBI:30769 (3)
CHEBI:73000 (3)
CHEBI:73001 (3)
CHEBI:10072 (2)
CHEBI:1427 (2)
CHEBI:14336 (2)
CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15428 (2)

Metabolite Name

2-Ethylpyrazine (2)
2-Piperidinone (2)
4-aminobenzoate (2)
9,10-DiHOME (2)
Argininosuccinic acid (2)
Choline (2)
Cystine (2)
Cytosine (2)
Ergothioneine (2)
Ethanolamine phosphate (2)
Gamma-Glu-Leu (2)
Histamine (2)
L-Carnitine (2)
L-Tryptophan (2)
LysoPC(0:0/18:0) (2)
LysoPC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/0:0) (2)
Melibiose (2)
PC(20:5(5Z,8Z,11Z,14Z,17Z)/P-18:1(11Z)) (2)
Phenylalanine (2)
Raffinose (2)
Sphinganine (2)
Stercobilin (2)
Succinate (2)
Sulfate (2)
Uridine (2)
(+)-Bornyl diphosphate (1)
(+)-Eseroline (1)
(+)-Galeon (1)
(+)-Pinoresinol (1)
(+)-cis-3,4-Dihydrophenanthrene-3,4-diol (1)

First Public Date

2022 (11)
2018 (11)
2020 (10)
2014 (10)
2024 (8)
2021 (7)
2026 (5)
2023 (5)
2017 (5)
2019 (4)
2016 (4)
2025 (1)
2015 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (4)
Agent-based model (1)

Lab affiliation

Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Institute of Medical Microbiology, University of Zurich (6)
Department of Cell and Chemical Biology, Leiden University Medical Center, Einthovenweg 20, 2333 ZC, Leiden, The Netherlands (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
Deputy Director – Science Strategy The Walter and Eliza Hall institute of Medical Research Professor, Department of Medical Biology Faculty of Medicine, Dentistry and Health The University of Melbourne Australia (2)
Laboratory Head Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville, AUS 3052 (2)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (2)
Osnabrück University (2)
Population Health and Immunity Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne, VIC, Australia (2)
Senior Postdoctoral Fellow, Huntington Laboratory, The Walter and Eliza Hall Institute, Australia (2)
The Walter and Eliza Hall institute of Medical Research, Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne (2)
Universidad Andrés Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Viña del Mar, Chile (2)
1 Department of Anaesthesiology, LMU University Hospital, Ludwig-Maximilian-University (LMU), Munich, Germany 2 Walter Brendel Center of Experimental Medicine, Research Unit Immune Function and Immune Metabolism, Ludwig-Maximilian-University (LMU), Munich, Germany (1)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1. Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany 2. Bioanalytics, University Medical Center, Robert-Koch-Straße 40, 37075 Göttingen, Germany (1)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
Associate Professor Tracy Putoczki The Walter and Eliza Hall Institute of Medical Research Australia (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
BioMedizinisches Centrum Walter-Brendel-Zentrum für Experimentelle Medizin Ludwig-Maximilians-Universität München (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA Children's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA. (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Children's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA. (1)
Biochemistry and Molecular Biophysics Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA (1)
Boehringer Ingelheim (1)
Cell culture technology, Technical faculty, Bielefeld University (1)
Clinic of Reproductive Medicine, Department of Farm Animals Vetsuisse-Faculty University Zurich (1)
Clinic of Reproductive Medicine, Vetsuisse Faculty, University of Zurich (1)
Clinic of Reproductive Medicine; Vetsuisse Faculty; University of Zurich (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil (1)

IsPrivate

False (5)

Classification

bacteria (2)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (158)
RNA-seq of coding RNA (20)
Methylation profiling by array (8)
ChIP-seq (7)
Comparative genomic hybridization by array (6)
MicroRNA profiling by array (3)
Unknown experiment type (2)
Cell line - Two-color microarray (2)
Animal - One-color microarray (2)
Other (2)
Proteomic profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Human - One-color microarray (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (354)
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2015 (190)
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2009 (50)
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2008 (37)
2007 (33)
2006 (24)
2005 (17)
2002 (11)
2003 (9)
2004 (7)
1999 (5)
2001 (3)
2000 (3)
1998 (3)
1997 (1)

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HSP90 promotes Burkitt lymphoma cell survival by maintaining tonic B cell receptor signaling

Burkitt’s lymphoma (BL) is an aggressive B-cell neoplasm that is currently treated by intensive chemotherapy in combination with anti-CD20 antibodies. Because of their toxicity, current treatment regimens are often not suitable for elderly patients or for patients in developing countries where BL is...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080781 | MassIVE

Giardia duodenalis Assemblage B Proteome

Giardia duodenalis a species-complex of common gastrointestinal protists of major medical and veterinary importance. This complex is currently subclassifed as ‘Assemblages’, with Assemblage A and B infective to humans. To date, post-genomic proteomics are derived exclusively from Assemblage A, biasi...

ORGANISM(S): Giardia intestinalis assemblage B

2018-07-03 | PXD007943 | Pride

Elucidation of tonic and activated B cell receptor signaling in Burkitt’s lymphoma provides insights into regulation of cell survival

B-cell receptor (BCR) signaling promotes the survival of malignant B cells, such as Burkitt’s lymphoma (BL) and the activated B-cell-like subtype of diffuse large B cell lymphoma (ABC-DLBCL). In contrast to ABC DLBCL, where malignant cells require chronic activation of the BCR for their survival, BL...

ORGANISM(S): Homo sapiens (Human)

2016-05-09 | PXD003492 | Pride

B cell receptor Phosphoproteome Lymphoma Cancer biology

The Walter B. Cannon Memorial Award Lecture, 2009. Physiology in perspective: The wisdom of the body. In search of autonomic balance: the good, the bad, and the ugly.

Not available

S-EPMC2886699 | biostudies-literature

The role of Erg in B cell development (ChIP-Seq)

PRJNA549273 | ENA

HSP90 promotes Burkitt lymphoma cell survival by maintaining tonic B cell receptor signaling

ORGANISM(S): Homo sapiens (Human)

2017-01-02 | PXD004181 | Pride

Hsp90 Burkitt’s lymphoma Bcr signaling Mass spectrometry Syk Phosphoproteomics