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TranscriptomicsRL-SAGE analysis of Zea mays leaf transcriptome
Using the RL-SAGE method (Gowda et al. 2004), a maize leaf longSAGE library (cv. inbred line B73) was constructed. Leaf tissues were harvested from 4-week old B73 plants for RNA isolation. The conditions in the growth chamber were 12 h light (500 µmol photons m-2 sec-1), 20oC at night, 26oC in the d...
ORGANISM(S): Zea mays 
2010-12-10 | E-GEOD-25994 | biostudies-arrayexpress
TranscriptomicsGene Expression Profile for knocking down Tet1 in pre-iPSCs culturing in Vc medium.
Tet1 is a hydroxylase known for its role in the conversion of 5-methylcytosines (5mC) to 5-hydroxymethylcytosines (5hmC) involved in the possible active demethylation process and gene expression regulation. As somatic cell reprogramming involves the re-activation of pluripotency genes and the silenc...
ORGANISM(S): Mus musculus 
2013-10-27 | E-GEOD-48206 | biostudies-arrayexpress
TranscriptomicsTranscriptome and methylome interactions in rice hybrids
This research reports genome-wide measurements of genetic and epigenetic patterns of inheritance through an integrative analysis of BS-seq, RNA-seq, and siRNA-seq data in two inbred parents of the Nipponbare (NPB) and Indica (93-11) variety of rice and their hybrid offspring. We generated integrativ...
ORGANISM(S): Oryza sativa Indica Group 
2012-07-10 | E-GEOD-38480 | biostudies-arrayexpress
MetabolomicsInhibition of anaerobic digestion by various ammonia sources resulted in subtle differences in metabolite dynamics

The impact of ammonia on anaerobic digestion performance and microbial dynamics has been extensively studied, but the concurrent effect of anions brought by ammonium salt should not be neglected. This paper studied this effect using metabolomics and a time-course statistical framework. Metabolomi...

2024-03-01 | MTBLS7859 | MetaboLights
GenomicsGenome-Wide Association Studies in Upper Gastrointestinal Cancers (Asian)

This project aims to conduct genome-wide association studies (GWAS) in two anatomically different upper gastrointestinal (UGI) cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cel...

phs000361.v1.p1 | EGA
TranscriptomicsOryza Sativa and Magnaporthe Grisea LongSAGE
LongSAGE library in this series are from 'Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System' project. This work is supported by NSF-PGRP #0115642. Keywords: other
ORGANISM(S): Oryza sativa Japonica Group 
2004-11-07 | E-GEOD-1924 | biostudies-arrayexpress
UnknownOverexpression of PD-L1 causes germ cells to slough from mouse seminiferous tubules via the PD-L1/PD-L1 interaction.
Not available
S-EPMC9097848 | biostudies-literature
ProteomicsMulti-omics analysis reveals regulatory networks of pattern-triggered immunity in rice
we performed multi-omics analysis to determine how rice PTI response to chitin and flg22. we integrated metablomics, transcriptomics, proteomics.
ORGANISM(S): Oryza Sativa 
2021-04-21 | PXD025565 |
ProteomicsA phosphorylation-dependent ubiquitination switch orchestrates nuclear immune reprogramming upon chitin perception
OsRLCK185 is a functional kinase, we then examined whether OsRLCK185 phosphorylates OsPUB20 using an in vitro kinase assay, OsRLCK185K108A served as a negative control. The results showed that GST-OsRLCK185, but not GST-OsRLCK185K108A, phosphorylates OsPUB20 in vitro. Using LC-MS/MS analysis after a...
ORGANISM(S): Oryza Sativa 
2026-01-29 | PXD073757 |
ProteomicsA phosphorylation-dependent ubiquitination switch orchestrates nuclear immune reprogramming
The nuclear localization of OsGF14f is crucial for blast resistance. To understand how OsGF14f functions in the nucleus to modulate blast resistance, we identified OsGF14f-interacting proteins by LC-MS/MS assays with OsGF14f-GFP plants. Among the candidate proteins, a nuclear-localized protein was O...
ORGANISM(S): Oryza Sativa 
2026-01-29 | PXD073756 |
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