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TranscriptomicsA global analysis of QTLs for expression variations in rice flag leaf at heading date
Analyses of QTLs for expression levels (eQTLs) of the genes reveal genetic relationship between expression variation and the regulator, thus unlocking the information for identifying the regulatory network. In this study, we used Affymetrix GeneChip Rice Genome Array to analyze eQTLs in rice flag le...
ORGANISM(S): Oryza sativa 
2014-02-05 | E-GEOD-49020 | biostudies-arrayexpress
UnknownLoss function of SL (sekiguchi lesion) in the rice cultivar Minghui 86 leads to enhanced resistance to (hemi)biotrophic pathogens.
Not available
S-EPMC7640399 | biostudies-literature
UnknownExtensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.
Not available
S-EPMC5024649 | biostudies-literature
TranscriptomicsDissecting the developmental transcriptomes of rice
Transcriptional programs are important for the development of complex eukaryotic organisms. Suites of genes expressed with temporal and spatial controls by regulatory networks in response to environmental cues are the cornerstone for achieving the specification of morphology and physiology of the ti...
ORGANISM(S): Oryza sativa Indica Group 
2010-01-20 | E-GEOD-19024 | biostudies-arrayexpress
UnknownReference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1.
Not available
S-EPMC8703405 | biostudies-literature
GenomicsTranscriptional Pause Release Is a Rate-Limiting Step for Somatic Cell Reprogramming (ChIP-seq)
Reactivation of the pluripotency network during somatic cell reprogramming by exogenous transcription factors involves chromatin remodeling and the recruitment of RNA polymerase II (Pol II) to target loci. Here, we report that Pol II is engaged at pluripotency promoters in reprogramming but remains ...
ORGANISM(S): Mus musculus 
2014-10-07 | E-GEOD-59828 | biostudies-arrayexpress
ProteomicsIdentification of key factors in cartilage tissue during the progression of osteoarthritis using a non-targeted metabolomics strategy
This work used non-targeted metabolomics and screened out differential metabolites and metabolic pathways, providing a reliable theoretical basis for further study of specific markers and their specific pathways in the progression of OA.
ORGANISM(S): Homo Sapiens 
PXD041287 |
UnknownGlobal genomic diversity of Oryza sativa varieties revealed by comparative physical mapping.
Not available
S-EPMC3982694 | biostudies-literature
TranscriptomicsTranscriptome of Aspergillus oryzae following ER stress
The Aspergillus oryzae, an important filamentous fungus used in food fermentation and enzyme industry, has been revealed to own prominent features in its genomic compositions by genome sequencing and various other tools. However, the functional complexity of the A. oryzae transcriptome has not yet b...
ORGANISM(S): Aspergillus oryzae 
2010-02-02 | E-GEOD-18851 | biostudies-arrayexpress
UnknownBuilding two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data.
Not available
S-EPMC5020871 | biostudies-literature
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