Wang Rui R - OmicsDI

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Unknown (224)
Proteomics (121)
Transcriptomics (26)
Metabolomics (17)
Genomics (7)
Models (2)

Organisms

Homo sapiens (79)
Mus musculus (37)
Schizosaccharomyces pombe (14)
Oryza sativa Indica Group (14)
Sinorhizobium meliloti BL225C (14)
Sus scrofa domesticus (14)
Saccharomyces cerevisiae (14)
Staphylococcus aureus (14)
Rattus norvegicus (14)
Escherichia coli (14)
Entamoeba histolytica (14)
Physcomitrium patens (14)
Methylohalobius crimeensis 10Ki (14)
Drosophila melanogaster (3)
Escherichia coli (3)
Rattus norvegicus (2)
Ovis aries (1)
Oryza sativa Japonica Group (1)
Escherichia coli K-12 (1)
Halomonas (1)
Escherichia coli RS218 (1)
Serratia marcescens LCT-SM213 (1)
Glaesserella parasuis (1)
Ganoderma lucidum G.260125-1 (1)
Spodoptera frugiperda (1)
Vibrio parahaemolyticus RIMD 2210633 (1)
Aspergillus flavus NRRL3357 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Sus scrofa domesticus (1)
Mus (1)

Repository

iProX (96)
biostudies-arrayexpress (31)
MetaboLights (15)
pride (14)
MassIVE (7)
Cell Collective (2)
EGA (2)
GNPS (2)
PeptideAtlas (2)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (5)
Epithelial cell (3)
Others (2)
Eye photoreceptor cell (1)
Mammary gland (1)
Malignant cell (1)
Retina (1)
Embryonic stem cell (1)
Diploid cell (1)
Brain (1)
Stem cell (1)
Kidney (1)
Liver (1)

Disease

Mastitis (1)
Wounds and Injuries (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (14)
Mass spectrometry (10)
Shotgun proteomics (5)
Mass spectrometry assay (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Bottom-up proteomics (2)
NMR spectroscopy (1)
Data-independent acquisition (1)
SRM/MRM (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (7)
Q Exactive HF (3)
Q Exactive (3)
TripleTOF 6600 (2)
LTQ Orbitrap XL (2)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Orbitrap Fusion Lumos (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2023 (18)
2022 (15)
2024 (13)
2025 (12)
2020 (11)
2021 (11)
2016 (8)
2012 (8)
2013 (6)
2014 (4)
2015 (3)
2011 (3)
2019 (3)
2026 (3)
2010 (2)
2018 (2)
2009 (1)
2017 (1)

UNIPROT ID/AC

Q96NU1 (2)
Q6UUV9 (2)
Q08357 (2)
O00712-6 (2)
Q9UPQ0 (2)
Q9UBK8 (2)
Q96RK0 (2)
Q8WUF5 (2)
Q8NEF9 (2)
Q12893 (2)
P50548 (2)
P35568 (2)
P27816-3 (2)
Q9Y5B0 (2)
Q9Y4A5 (2)
Q9P0V3 (2)
Q9NRG9 (2)
Q9NRG0 (2)
Q9H4G0-4 (2)
Q9H4G0-2 (2)
Q9H4G0 (2)
Q9GZP8 (2)
Q9BRZ2 (2)
Q8N3D4 (2)
Q8IVT2 (2)
Q6WCQ1 (2)
Q63ZY3 (2)
Q9Y618 (2)
Q9Y580 (2)
Q9Y4H2 (2)

ENSEMBL ID

ENSG00000147251 (1)

CHEBI ID

CHEBI:17368 (6)
CHEBI:16704 (5)
CHEBI:18089 (5)
CHEBI:28792 (4)
CHEBI:30860 (4)
CHEBI:77131 (4)
CHEBI:16424 (4)
CHEBI:16755 (4)
CHEBI:16525 (4)
CHEBI:15698 (4)
CHEBI:9300 (4)
CHEBI:28621 (4)
CHEBI:16750 (4)
CHEBI:28875 (4)
CHEBI:28842 (4)
CHEBI:16168 (4)
CHEBI:17015 (4)
CHEBI:15727 (4)
CHEBI:16196 (4)
CHEBI:17620 (4)
CHEBI:17568 (4)
CHEBI:16259 (4)
CHEBI:16467 (4)
CHEBI:17012 (4)
CHEBI:15891 (4)
CHEBI:16359 (4)
CHEBI:24813 (4)
CHEBI:43355 (4)
CHEBI:15366 (4)
CHEBI:16027 (4)

Metabolite Name

Sinapic acid (3)
Taurine (3)
L-pipecolic acid (2)
Ketamine (2)
L-saccharopine (2)
5-methylcytosine (2)
(+)-Gallocatechin (2)
Guanosine diphosphate (2)
L-Galacto-2-heptulose (2)
3-methyl-4-(sulfooxy)but-2-enoic acid (2)
3,4,5-trihydroxy-6-(2-hydroxyethoxy)oxane-2-carboxylic acid (2)
[(16R)-5,7-dihydroxy-8,8,12,16-tetramethyl-3-[1-(2-methyl-1,3-thiazol-4-yl)prop-1-en-2-yl]-10-methylidene-9-oxo-17-oxa-4-azabicyclo[14.1.0]heptadec-4-en-11-yl]oxidanesulfonic acid (2)
Domesticoside (2)
N-gamma-Glutamyl-S-allylcysteine (2)
Ichangin 4-glucoside (2)
Koenigine (2)
3,4,5-trihydroxy-6-(3-phenylpropoxy)oxane-2-carboxylic acid (2)
8-Acetyl-T2 tetrol (2)
(S)-9-Hydroxy-10-undecenoic acid (2)
Prenyl arabinosyl-(1->6)-glucoside (2)
Pantoyllactone glucoside (2)
(3beta,22E,24R)-3-Hydroxyergosta-5,8,22-trien-7-one (2)
Capsianoside V (2)
(3beta,17alpha,23S,24S)-17,23-Epoxy-3,24,29-trihydroxy-27-norlanost-8-en-15-one (2)
(3beta,17alpha,23S)-17,23-Epoxy-3,29-dihydroxy-27-norlanost-8-en-24-one (2)
(3b,16a,20R)-3,16,20,22,25-Pentahydroxy-5-cucurbiten-11-one 3-[glucosyl-(1->6)-glucoside] (2)
(23S,24S)-17,23-Epoxy-24,29-dihydroxy-27-norlanost-8-ene-3,15-dione (2)
6-Thioinosine-5'-monophosphate (2)
6-({3-[(1E)-buta-1,3-dien-1-yl]-1-oxo-1H-isochromen-5-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid (2)
5-Megastigmen-7-yne-3,9-diol 9-glucoside (2)

Study type

Transcription profiling by array (17)
RNA-seq of coding RNA (7)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (2)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (26)
2022 (24)
2021 (24)
2016 (23)
2023 (22)
2024 (21)
2019 (20)
2015 (19)
2017 (14)
2020 (12)
2012 (8)
2018 (8)
2013 (7)
2014 (6)
2011 (6)
2026 (5)
2009 (4)
2010 (3)
2007 (1)

Lab affiliation

Division of Nephrology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (2)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Wuhan Institute of Physics and Mathematics (1)
HGSC, Baylor College of Medicine (1)
Department of Medical Oncology, Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Guangdong Provincial Clinical Research Center for Cancer, Sun Yat-sen University, Guangzhou 510060, P. R. China (1)
School of life science, Peking University,Beijing (1)
West No.30 Xiao Hong Shan, Wuhan, Hubei 430071, China Email: hurui@apm.ac.cn (1)
School of life science, Peking University, Beijing (1)
Northwest Agriculture and Forestry University, Yangling District, Xianyang City, Shaanxi Province, China (1)
School of Life Sciences ,Ji Xiong lab, Peking University, Beijing, China (1)
Texas Tech University (1)
Wuhan University (1)
China Agricultural University (1)

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Metabolomic insights into the browning of the peel of bagging 'Rui Xue' apple fruit

BACKGROUND: Bagging is one of the most important techniques for the production of high-quality fruits. In the act of cultivation, we found a new kind of browning in peel of the apple fruit that occurs before harvest and worsens during the storage period. There are many studies on...

2021-04-09 | MTBLS2384 | MetaboLights

Tidal filtering drives microbiome assembly and metabolic coupling in desiccation-tolerant red algae

This study investigates how the intertidal red alga Pyropia haitanensis (Bangiophyceae) achieves rapid desiccation-rehydration tolerance through coordinated interactions between the host, its associated microbiome, and key metabolites. By integrating 16S rRNA amplicon sequencing, metag...

2026-05-07 | MTBLS13613 | MetaboLights

Bibliometric analysis of skeletal muscle ischemia/reperfusion (I/R) research from 1986 to 2022.

Not available

S-EPMC11416534 | biostudies-literature

Hepatitis B virus genotypes and genome characteristics in China.

Not available

S-EPMC4458779 | biostudies-literature

Two novel VPS33B mutations in a patient with arthrogryposis, renal dysfunction and cholestasis syndrome in mainland China.

Not available

S-EPMC3886028 | biostudies-literature

Quantitative proteomic analysis of the role of knocking down NRP1 after OGD/R in primary renal tubular epithelial cells

Neuropilin-1 (NRP1), a co-receptor for various cytokines, including TGF-β, has been identified as a potential therapeutic target for fibrosis. However, its role and mechanism in renal fibrosis remains elusive. Here, we show that NRP1 is upregulated in distal tubular (DT) cells of patients with trans...

ORGANISM(S): Mus musculus (Mouse)

2024-06-03 | PXD052244 | Pride

UCSCXenaShiny: an R/CRAN package for interactive analysis of UCSC Xena data.

Not available

S-EPMC8723150 | biostudies-literature

Metastasis-associated in colon cancer-1 in gastric cancer: Beyond metastasis.

Not available

S-EPMC4970472 | biostudies-literature

AI-Based Quantitative HRCT for In-Hospital Adverse Outcomes and Exploratory Assessment of Reinfection in COVID-19.

Not available

S-EPMC12732024 | biostudies-literature

Sensing Ceramides by CYSLTR2 and P2RY6 to Aggravate Atherosclerosis

Recent evidence shows elevated circulating long-chain ceramide levels predicts atherosclerotic cardiovascular disease (ASCVD) independently of cholesterol. Although targeting ceramides signaling may provide therapeutic benefits beyond the treatment of hypercholesterolemia, the underlying mechanis...

2025-04-15 | MTBLS11925 | MetaboLights

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397 Results

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Organisms

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OmicsDI is part of the ELIXIR infrastructure

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