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TranscriptomicsSpecific sequence determinants of miR-15/107 microRNA gene group targets
Using anti-Argonaute (anti-AGO) antibody co-immunoprecipitation, followed by microarray analyses and downstream bioinformatics, ‘RIP-Chip’ experiments enable direct analyses of miRNA targets. The analyses support four major findings: (i) RIP-Chip studies correlated with total input mRNA profiling pr...
ORGANISM(S): Homo sapiens 
2012-12-11 | E-GEOD-42823 | biostudies-arrayexpress
MetabolomicsMetabonomic analysis of human and 12 kinds of livestock mature milk

Mature milk, as a nutrient-rich endogenous metabolite, has various beneficial effects on the human body. In order to investigate the specific nutrients provided by different dairy products to humans, we used UHPLC-Q-TOF MS to analyze the highly significantly differentially expressed metabolites i...

2023-08-21 | MTBLS6777 | MetaboLights
TranscriptomicsNext Generation Sequencing Facilitates Quantitative Analysis of miRNAs in hepatic fibrosis and normal tissues.
Aim: Hepatic fibrosis is a major worldwide medical problem and can develop into liver cirrhosis and hepatocellular carcinoma(HCC). Until now, there are no effective drugs for liver ?brosis because the molecular mechanism of progression of liver fibrosis is not fully understood. MicroRNAs (miRNAs) ar...
ORGANISM(S): Rattus norvegicus 
2015-06-04 | E-GEOD-54028 | biostudies-arrayexpress
ProteomicsCo-immunoprecipitation followed by mass spectrometry (Co-IP/MS) data of HNRNPF.
The interacting proteins of HNRNPF were identified in mouse embryonic stem cells by co-immunoprecipitation followed by mass spectrometry (Co-IP/MS).
ORGANISM(S): Mus musculus (Mouse) 
2025-06-30 | PXD065613 | Pride
Mesc Hnrnpf 
MetabolomicsMetabolomics analyses of cancer tissue from patients with colorectal cancer.
The alteration of metabolism is essential for the initiation and progression of numerous types of cancer, including colorectal cancer (CRC). Metabolomics has been used to study CRC. At present, the reprogramming of the metabolism in CRC remains to be fully elucidated. In the present study, comprehen...
2024-02-08 | MTBLS8090 | MetaboLights
GenomicsTranscription factor Achaete-Scute homologue 2 initiates T follicular helper cell development [ChIP-Seq]
In immune responses, activated T cells migrate to B cell follicles and develop to T follicular helper (Tfh) cells, a new subset of CD4+ T cells specialized in providing help to B lymphocytes in the induction of germinal centers 1-3. Although Bcl6 has been shown to be essential in Tfh cell function, ...
ORGANISM(S): Mus musculus 
2014-01-01 | E-GEOD-52839 | biostudies-arrayexpress
MetabolomicsCroquemort elicits activation of the immune deficiency pathway in ticks
The immune deficiency (IMD) pathway directs host defense in arthropods upon bacterial infection. In Pancrustacea, peptidoglycan recognition proteins sense microbial moieties and initiate nuclear factor-κB-driven immune responses. Proteins that elicit the IMD pathway in non-insect arthropods remain e...
2023-04-27 | MTBLS686 | MetaboLights
ProteomicsNS7a of SADS-CoV promotes viral infection via inducing apoptosis to suppress Type III interferon production
SADS-CoV is a newly discovered swine coronavirus with potential cross-species transmission risk. Although SADS-CoV-induced host cell apoptosis and attenuated innate immunity has been established, the relation between apoptosis and innate immunity remain obscure. Here, we demonstrate that infection o...
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2025-05-06 | PXD047032 | Pride
Viral replication Swine acute diarrhea syndrome virus (sads-cov) Ns7a Apoptosis Apoptosis inducing factor mitochondria associated 1 (aifm1) Ifn-λ 
UnknownAssociation between Cerebrospinal Fluid sTREM2 Levels and Depression: The Alzheimer's Disease Neuroimaging Initiative Study.
Not available
S-EPMC12275841 | biostudies-literature
TranscriptomicsDeep profiling of the novel intermediate-size noncoding RNAs in intraerythrocytic Plasmodium falciparum
Intermediate-size noncoding RNAs (is-ncRNAs) have been shown to play important regulatory roles in the development of several eukaryotic organisms. However, they have not been thoroughly explored in Plasmodium falciparum, which is the most virulent malaria parasite infecting human being. By using Il...
ORGANISM(S): Plasmodium falciparum 
2014-03-30 | E-GEOD-45172 | biostudies-arrayexpress
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