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TranscriptomicsPacBio Iso-Seq transcriptome sequencing data of multiplexed maize cDNA
Full-Length cDNA transcriptome (Iso-Seq) data sequenced on the PacBio Sequel system using 2.1 chemistry. Multiplexed cDNA library of 12 samples (3 tissues x 4 strains). Tissues: root, embryo, endosperm. Strains: B73, Ki11, B73xKi11, Ki11xB73.
ORGANISM(S): Zea mays 
2020-02-25 | E-MTAB-7837 | biostudies-arrayexpress
TranscriptomicsRNA-Seq and BS-Seq of Sorghum bicolor tissues
This experiment contains the subset of data corresponding to sorghum RNA-Seq data from experiment E-GEOD-50464 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50464/), which goal is to examine the transcriptome of various Sorghum bicolor (BTx623) tissues: flowers, vegetative and floral meriste...
ORGANISM(S): Sorghum bicolor 
2014-08-29 | E-MTAB-3839 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of Sorghum bicolor 9d seedlings in response to osmotic stress and abscisic acid
This study utilized next generation sequencing technology (RNA-Seq) to examine the transcriptome of sorghum plants challenged with osmotic stress and exogenous abscisic acid (ABA) to elucidate those genes and gene networks that contribute to sorghum's tolerance to water-limiting environments with a ...
ORGANISM(S): Sorghum bicolor 
2011-10-26 | E-GEOD-30249 | biostudies-arrayexpress
TranscriptomicsRNA-Seq and BS-Seq of Sorghum bicolor tissues
This study utilized next generation sequencing technology (RNA-Seq and BS-Seq) to examine the transcriptome and methylome of various tissues within sorghum plants with the ultimate goal of improving the Sorghum bicolor annotation We examined the mRNA of various Sorghum bicolor (BTx623) tissues (flow...
ORGANISM(S): Sorghum bicolor 
2014-08-29 | E-GEOD-50464 | biostudies-arrayexpress
TranscriptomicsA Genome-Wide Characterization of MicroRNA Genes in Maize
MicroRNAs (miRNAs) are small non-coding RNAs that play essential roles in plant growth and development. We conducted a genome-wide survey of maize miRNA genes, characterizing their structure, expression, and evolution. Computational approaches based on homology and secondary structure modeling ident...
ORGANISM(S): Zea mays 
2009-11-23 | E-GEOD-17943 | biostudies-arrayexpress
TranscriptomicsRegulatory Modules Controlling Maize Inflorescence Architecture: mRNA-seq data
In this study we used the maize (Zea mays) inflorescence to investigate gene networks that modulate determinacy, specifically the decision to allow branch growth. We characterized developmental transitions by associating spatiotemporal expression profiles with morphological changes resulting from g...
ORGANISM(S): Zea mays 
2013-11-27 | E-GEOD-51047 | biostudies-arrayexpress
GenomicsThe maize methylome modulates mRNA splicing and reveals widespread paramutation guided by small RNA.
Methylation of chromosomal DNA in animals and plants is a fundamental mechanism of epigenetic regulation, and the maize genome, with its diverse complement of transposons and repeats, is a paradigm for transgenerational mechanisms such as paramutation and imprinting. We have determined the genome-wi...
ORGANISM(S): Zea mays 
2013-06-03 | E-GEOD-39232 | biostudies-arrayexpress
TranscriptomicsCharacterization of miRNA expression in response to short-term waterlogging in Maize roots
Waterlogging of plants leads to low oxygen levels (hypoxia) in the roots and causes a metabolic switch from aerobic respiration to anaerobic fermentation that results in rapid changes in gene transcription and protein synthesis. Our research seeks to characterize the gene regulatory networks associa...
ORGANISM(S): Zea mays 
2011-10-15 | E-GEOD-32983 | biostudies-arrayexpress
GenomicsRegulatory Modules Controlling Maize Inflorescence Architecture: ChIP-seq data
In this study we investigated the developmental dynamics of genes targeted in vivo by the transcription factor RAMOSA1, a key regulator of determinacy, and revealed potential mechanisms for repressing branches in distinct stem cell populations in developing maize inflorescences. To identify targets...
ORGANISM(S): Zea mays 
2013-11-27 | E-GEOD-51048 | biostudies-arrayexpress
TranscriptomicsPervasive gene content variation and copy number variation in both maize and its undomesticated progenitor
Different individuals of the same species are generally thought to have very similar genomes. However, there is growing evidence that structural variation in the form of copy number variation (CNV) and presence-absence variation (PAV) can lead to variation in the genome content of individuals within...
ORGANISM(S): Zea mays 
2010-10-15 | E-GEOD-23756 | biostudies-arrayexpress
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