Webber R R - OmicsDI

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Unknown (357)
Transcriptomics (11)
Genomics (4)
Proteomics (4)
Metabolomics (3)

Organisms

Homo sapiens (10)
Salmonella enterica (2)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Escherichia coli K-12 (1)
Escherichia coli (1)
Mus musculus (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (14)
MetaboLights (3)
pride (3)
MassIVE (1)
ENA (1)

Tissue

Epithelial cell (2)
Lung (1)
Lung neuroendocrine cell (1)

Disease

Cervix carcinoma (1)
Pulmonary neuroendocrine tumor (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (3)
Shotgun proteomics (2)
Bottom-up proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 4000 (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)

Publication Date

2023 (3)
2022 (3)
2009 (3)
2020 (2)
2019 (1)
2018 (1)
2017 (1)
2016 (1)
2015 (1)
2014 (1)
2012 (1)
2010 (1)
2008 (1)
2025 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15414 (2)
CHEBI:15741 (2)
CHEBI:16335 (2)
CHEBI:16530 (2)
CHEBI:16610 (2)
CHEBI:16708 (2)
CHEBI:16750 (2)
CHEBI:16765 (2)
CHEBI:16856 (2)
CHEBI:16865 (2)
CHEBI:17148 (2)
CHEBI:17509 (2)
CHEBI:17533 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:17748 (2)
CHEBI:17992 (2)
CHEBI:18012 (2)
CHEBI:18026 (2)
CHEBI:18123 (2)
CHEBI:27732 (2)
CHEBI:28865 (2)
CHEBI:30753 (2)
CHEBI:30754 (2)
CHEBI:30763 (2)
CHEBI:30769 (2)
CHEBI:30860 (2)
CHEBI:35932 (2)
CHEBI:48294 (2)

Metabolite Name

(+)-14-methyl palmitic acid (1)
(+)-18-methyl-eicosanoic acid (1)
(+)-3-hydroxy behenic (1)
(+)-7-Isomethyljasmonate (1)
(+)-Borneol (1)
(+)-Isomenthone (1)
(+)-Isostearic acid (1)
(+)-Linalool (1)
(+)-Menthone (1)
(+)-N-Methylconiine (1)
(+)-Pronuciferine (1)
(+)-Quercitol (1)
(+)-Sceletium A4 (1)
(+)-abscisate (1)
(+)-gamma-Hydroxy-L-homoarginine (1)
(+)-trans-Piperitenol (1)
(+)-trans-Pulegol (1)
(+-)-Carnegine (1)
(+/-)-6-Hydroxy-3-oxo-alpha-ionol (1)
(+/-)-Homochelidonine (1)
(-)-5-(3,4,5-trihydroxyphenyl)-gamma-valerolactone (1)
(-)-Abscisic acid (1)
(-)-Acanthocarpan (1)
(-)-Borneol (1)
(-)-Hygrine (1)
(-)-Hygroline (1)
(-)-Linalool (1)
(-)-Menthone (1)
(-)-Quebrachitol (1)
(-)-Sedamine (1)

First Public Date

2017 (1)

Study type

Transcription profiling by array (7)
DNA-seq (2)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
ATAC-seq (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (48)
2023 (47)
2024 (44)
2021 (34)
2022 (33)
2020 (29)
2018 (22)
2019 (21)
2015 (14)
2014 (13)
2017 (10)
2016 (10)
2010 (9)
2012 (7)
2013 (7)
2011 (7)
2009 (6)
2026 (4)
2008 (3)
2005 (1)
2004 (1)
1999 (1)

Lab affiliation

Department of Chemistry and Biochemistry, Brigham Young University (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, 84602 (1)
Medicine, University of California San Francisco (1)

Tags

xref:PubMed:28111278 (1)

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The vulnerable primed cancer stem cells in disguise: demystifying the role of Maspin.

Not available

S-EPMC9713111 | biostudies-literature

Hypoxic niches are endowed with a protumorigenic mechanism that supersedes the protective function of PTEN.

Not available

S-EPMC6894060 | biostudies-literature

Transcription profiling of Salmonella enterica serovar Typhimurium to investigate the disruption of tolC on the transcriptome

Analysis of the effect of disruption of tolC on the transcriptome of Salmonella enterica serovar Typhimurium

ORGANISM(S): Salmonella typhimurium

2009-06-03 | E-MEXP-1982 | biostudies-arrayexpress

Transcription profiling of Salmonella enterica serovar Typhimurium to investigate the effects of acrB duisruption

Analysis of effect of disruption of acrB on the transcriptome of Salmonella enterica serovar Typhimurium

ORGANISM(S): Salmonella typhimurium

2009-06-03 | E-MEXP-1981 | biostudies-arrayexpress

Colorectal surgeon physical pain and conditioning: a national survey.

Not available

S-EPMC11818781 | biostudies-literature

Transcription profiling of wild type and acrA inactivated Salmonella enterica to investigate the role of acrA in antibiotic resistance and pathogenicity

To investigate the role of acrA in antibiotic resistance and pathogenicity this gene was inactivated by insertion of a kanamycin cassette in strain SL1344 and the results on the transcriptome determined.

ORGANISM(S): Salmonella enterica

2008-12-31 | E-MEXP-1832 | biostudies-arrayexpress

Virtual pulmonary rehabilitation approaches in patients with post COVID syndrome: a pilot study.

Not available

S-EPMC10949685 | biostudies-literature

A compressible porous superhydrophobic material constructed by a multi-template high internal phase emulsion method for oil-water separation.

Not available

S-EPMC10466179 | biostudies-literature

An efficient method for high molecular weight bacterial DNA extraction suitable for shotgun metagenomics from skin swabs.

Not available

S-EPMC10438817 | biostudies-literature

Accelerating therapeutics development during a pandemic: population pharmacokinetics of the long-acting antibody combination AZD7442 (tixagevimab/cilgavimab) in the prophylaxis and treatment of COVID-19.