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ProteomicsSystems-wide analysis of manganese deficiency-induced changes in gene activity of Arabidopsis roots
In this study, we undertook a comprehensive quantitative proteomic profiling of Arabidopsis roots from plants grown on Mn-deplete media, aiming at dissecting and cataloging the responses of Arabidopsis roots to Mn deficiency. We used LC-Q Exactive Orbitrap mass spectrometer to compile a near complet...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-26 | PXD003309 | Pride
Proteomics Manganese deficiency Systems biology Transcriptomics Post-transcriptional regulation 
ProteomicsiTRAQ-based quantitative phosphoproteomic analysis of a prp4ka mutant in Arabidopsis thaliana
We identified PRP4 kinase-A (PRP4ka) in a forward genetic screen based on an alternatively-spliced GFP reporter gene in Arabidopsis thaliana (Arabidopsis). Prp4 kinase, which was the first spliceosome-associated kinase shown to regulate splicing in fungi and mammals, has not yet been studied in plan...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-25 | PXD008580 | Pride
Arabidopsis thaliana Pre-mrna splicing Prp4ka Itraq Quantitative phosphoproteomics 
TranscriptomicsIdentification of Hfq bound RNA by co-immunoprecipitation and RNA-sequencing
Co-immunoprecipitation with endogenous Hfq3xFlag in exponential, stationary, non-induced and virulence induced conditions, followed by RNA-sequencing, revealed 1697 mRNAs and 208 ncRNAs associated with Hfq. We identified 56 new ncRNAs and validated 3 Hfq-dependent trans sRNAs on by Northern blot ana...
ORGANISM(S): Agrobacterium tumefaciens 
2014-12-04 | E-GEOD-59123 | biostudies-arrayexpress
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