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TranscriptomicsTranscription profiling of Arabidopsis mutant REVOLUTA (HDZIPIII) to identify downstream targets
The establishment of ad/abaxial polarity is a fundamental event in plant development. It is critical for correct polar development of the leaf (the upper portion of the leaf is chloroplast rich and optimized for light capture while the lower portion is optimized for gas exchange) and for creating a...
ORGANISM(S): Arabidopsis thaliana 
2008-06-15 | E-GEOD-7003 | biostudies-arrayexpress
TranscriptomicsKANADI1-regulated genes in shade
RNA-Seq of Arabidopsis thaliana Col-0 and 35S::FLAG-GR-KAN1 plants grown in ambient light or shade. 8 samples (Col-0 wildtype, 35S::FLAG-GR-KAN1 each in shade or ambient light, each with mock or Dexamethasone treatment) with two technical replicates were sequenced.
ORGANISM(S): Arabidopsis thaliana 
2015-08-11 | E-GEOD-68684 | biostudies-arrayexpress
GenomicsGenome-wide identification of KANADI1 target genes
A combination of ChIP-Seq and genome-wide mRNA expression profiling using tilling arrays was used to identify genes bound and regulated by the KANADI1 transcription factor. A. thaliana KAN1 ChIP-seq w. control, 2 replicates This submission represents ChIP-Seq component of study.
ORGANISM(S): Arabidopsis thaliana 
2013-11-22 | E-GEOD-48081 | biostudies-arrayexpress
GenomicsRole of class III HD‐ZIP transcription factors in shade signaling
Unlike the situation in animals, the final morphology of the plant body is highly modulated by the environment. During Arabidopsis development, intrinsic factors provide the framework for basic patterning processes. CLASS III HOMEODOMAIN LEUCINE ZIPPER (HD‐ZIPIII) transcription factors are involved ...
ORGANISM(S): Arabidopsis thaliana 
2012-06-01 | E-GEOD-26722 | biostudies-arrayexpress
TranscriptomicsCharacterization of miP1a/b (microProteins) overexpression plants, including a constans mutant (co-SAIL)
MicroProteins are short, single domain proteins that act by sequestering larger, multidomain proteins into non-functional complexes. MicroProteins have been identified in plants and animals, where they are mostly involved in the regulation of developmental processes. Here we show that two Arabidopsi...
ORGANISM(S): Arabidopsis thaliana 
2016-03-08 | E-GEOD-56811 | biostudies-arrayexpress
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