White David J DJ

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Unknown (104)
Genomics (11)
Proteomics (7)
Metabolomics (5)
Transcriptomics (3)
Genomic (1)

Organisms

Homo sapiens (12)
Mus musculus (4)

Repository

EGA (9)
biostudies-arrayexpress (5)
MetaboLights (5)
MassIVE (4)
dbGaP (1)
jPOST (1)
PAXDB (1)
pride (1)

Tissue

Epithelial cell (1)

Technology Type

Mass spectrometry (5)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina_660K/Illumina_670K (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Mass Spectrometry (1)

Instrument Platform

Q Exactive (2)
Exactive Plus (1)
LTQ Orbitrap (1)
Orbitrap Exploris 480 (1)
6520 Q-TOF LC/MS (Agilent) (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)

Publication Date

2016 (5)
2020 (4)
2024 (2)
2015 (1)
2012 (1)
2011 (1)
2005 (1)
2017 (1)
2021 (1)

UNIPROT ID/AC

160488.PP_0985 (1)
160488.PP_3365 (1)
ACCA_PSEPK (1)
ACCD_PSEPK (1)
ACP_PSEPK (1)
ACSA1_PSEPK (1)
ADE_PSEPK (1)
AGUA_PSEPK (1)
AK_PSEPK (1)
ALGB_PSEPK (1)
ALGC_PSEPK (1)
ALLA_PSEPK (1)
AMGK_PSEPK (1)
AMPA_PSEPK (1)
ANMK_PSEPK (1)
APAG_PSEPK (1)
APAH_PSEPK (1)
APEB_PSEPK (1)
APT_PSEPK (1)
ARCA_PSEPK (1)
ARGA_PSEPK (1)
ARGB_PSEPK (1)
ARGC1_PSEPK (1)
ARGD_PSEPK (1)
ARGJ_PSEPK (1)
ARLY_PSEPK (1)
AROB_PSEPK (1)
AROC_PSEPK (1)
AROK_PSEPK (1)
AROQ1_PSEPK (1)

CHEBI ID

CHEBI:15978 (2)
CHEBI:16543 (2)
CHEBI:17084 (2)
CHEBI:17768 (2)
CHEBI:18237 (2)
CHEBI:18295 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:28044 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:61993 (2)
CHEBI:73527 (2)
CHEBI:75010 (2)
CHEBI:10072 (1)
CHEBI:111517 (1)
CHEBI:116314 (1)
CHEBI:131434 (1)
CHEBI:132188 (1)
CHEBI:132476 (1)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132948 (1)
CHEBI:132966 (1)
CHEBI:132983 (1)
CHEBI:133028 (1)
CHEBI:133032 (1)
CHEBI:133057 (1)

Metabolite Name

(-)-Epigallocatechin (1)
(.+/-.)-Lyoniresinol 2a-O-.beta.-D-glucopyranoside (1)
(.alpha.S,1S,2R)-.alpha.-Amino-2-carboxycyclopropaneacetic acid (1)
(1-Acetyloxy-3-hydroxy-6,8a-dimethyl-7-oxo-3-propan-2-yl-2,3a,4,8-tetrahydro-1H-azulen-4-yl) 4-hydroxybenzoate (1)
(1-Hydroxycyclohexyl)acetic acid (1)
(12Z)-9,10,11-Trihydroxyoctadec-12-enoic acid (1)
(17Z)-16-(Acetyloxy)-6-hydroxy-4,8,14-trimethyl-3,7-dioxo-18-norcholesta-17,24-dien-21-oic acid (1)
(2E)-N-(4-Acetamidobutyl)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enamide (1)
(2E,4E)-5-(6-((.beta.-D-Glucopyranosyloxy)methyl)-1-hydroxy-2,6-dimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid (1)
(2E,4E)-7,12-Dihydroxy-13-(hydroxymethyl)-3,5,7-trimethyltetradeca-2,4-dienedioic acid (1)
(2E,6E,10E,14S)-14-((2-O-.beta.-D-Glucopyranosyl-.beta.-D-glucopyranosyl)oxy)-2,6,10,14-tetramethylhexadeca-2,6,10,15-tetraenoic acid (1)
(2R,3R,4S,5S,6R)-2-Octoxy-6-[[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxymethyl]oxane-3,4,5-triol (1)
(2S)-2-[(2R,3S,7R,8R,8aS)-2,3,4'-Trihydroxy-4,4,7,8a-tetramethyl-6'-oxospiro[2,3,4a,5,6,7-hexahydro-1H-naphthalene-8,2'-3,8-dihydrofuro[2,3-e]isoindole]-7'-yl]-3-methylbutanoic acid (1)
(2S)-4-Amino-2-hydroxybutanoic acid (1)
(3-(Hexopyranosyloxy)-2-((2Z)-pent-2-en-1-yl)cyclopentyl)acetic acid (1)
(3.beta.,5.Xi.,8.alpha.,9.beta.,10.alpha.,16.beta.)-16-Hydroxykauran-3-yl .beta.-D-glucopyranoside (1)
(3.beta.,5.Xi.,9.Xi.,18.Xi.)-3,19-Dihydroxyurs-12-ene-24,28-dioic acid (1)
(3S,4S,6aR,6bS,8R,8aR,12aS,14bR)-8-Hydroxy-4,6a,6b,11,11,14b-hexamethyl-3-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicene-4,8a-dicarboxylic acid (1)
(3S,6R,12S)-6-Benzyl-3-butan-2-yl-9-(6,7-dihydroxyoctyl)-1,4,7,10-tetrazabicyclo[10.4.0]hexadecane-2,5,8,11-tetrone (1)
(4-(.beta.-D-Glucopyranosyloxy)-2,6-bis(3-methylbut-2-en-1-yl)phenyl)(hydroxy)acetic acid (1)
(5-Chloro-1H-benzimidazol-2-yl)methanol (1)
(5.Xi.,9.Xi.,18.Xi.)-3-Oxolup-20(29)-ene-27,28-dioic acid (1)
(7E)-11-Hydroxy-4,5,8,13,13-pentamethyl-3-(2-methylpropyl)-3,3a,4,6a,9,10,11,11a,14a,15-decahydro-1H-[1,3]dioxolo[9,10]oxacyclododecino[2,3-d]isoindole-1,16(2H)-dione (1)
(9Z,12E)-15,16-Dihydroxyoctadeca-9,12-dienoic acid (1)
(E)-1-Hydroxy-2-methylbut-2-enyl 4-diphosphate (1)
(E)-3,10-Dihydroxy-4,9-dimethyldodec-6-enedioic acid (1)
(E)-3-(4-Acetyloxy-2,3-dihydroxy-2,5,5,8a-tetramethyl-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl)prop-2-enoic acid (1)
(E)-4-Hydroxy-4-[4-hydroxy-2-[(E)-6-hydroxyhept-1-enyl]cyclopentyl]but-2-enoic acid (1)
(E)-4-[4-[(E)-Hept-1-enyl]-2,5-dihydroxy-3-(hydroxymethyl)-7-oxabicyclo[4.1.0]hept-3-en-6-yl]-2-methylbut-2-enoic acid (1)
(E)-5-Hydroxyundec-2-enoic acid (1)

Study type

ChIP-seq (2)
Transcription profiling by array (2)
RNA-seq of coding RNA (1)

Release Date

2021 (16)
2025 (14)
2024 (11)
2023 (11)
2022 (8)
2011 (7)
2018 (7)
2016 (4)
2015 (4)
2020 (4)
2019 (4)
2014 (4)
2012 (3)
2010 (3)
2008 (3)
2017 (2)
2005 (1)
2026 (1)
2013 (1)
2009 (1)

Lab affiliation

MIT Department of Biological Engineering David H Koch Institute for Integrative Cancer Research (1)

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Epigenome in brown and white adipose tissue

For comparative epigenomic analysis of brown fat and white fat in mice, H3K27ac and PolII ChIP-seq were performed in each depot. H3K27ac histone modification and PolII transcription profiles in mouse brown and white adipose tissues

ORGANISM(S): Mus musculus

2015-02-10 | E-GEOD-63964 | biostudies-arrayexpress

The Nuclear Receptor Rev-erb alpha Regulates Adipose Tissue-Specific FGF21 Signaling (Microarray)

To investigate the role of the transcriptional repressor Rev-erb alpha in epididymal white adipose tissue, we performed a microarray analysis of gene expression in the epididymal white adipose tissue of wildtype and Rev-erb alpha knock-out mice. Examination of the transcriptome in epididymal white a...

ORGANISM(S): Mus musculus

2016-07-20 | E-GEOD-79164 | biostudies-arrayexpress

Narrow Dialysis Networks In Medicare Advantage: Exposure By Race, Ethnicity, And Dual Eligibility.

Not available

S-EPMC10837791 | biostudies-literature

Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugs (T. congolense assay)

Livestock diseases caused by Trypanosoma congolense, T. vivax and T. brucei, collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under v...

2020-10-22 | MTBLS1309 | MetaboLights

Pputida - Whole organism, NSAF (Lidburyetal,environmicrobiol,2016)

abundance based on NSAF, Interaction consistency score: 12.3, Coverage: 38

ORGANISM(S): 160488

2016-00-00 | 1991256584 | PAXDB

Quantification of neurofilament light and glial fibrillary acidic protein in finger-prick blood.

Not available

S-EPMC11189302 | biostudies-literature

NQO1 protects obese mice through improvements in glucose and lipid metabolism.

Chronic nutrient excess leads to metabolic disorders and insulin resistance. Activation of stress-responsive pathways via Nrf2 activation contributes to energy metabolism regulation. Here, inducible activation of Nrf2 in mice and transgenesis of the Nrf2 target, NQO1, conferred protection from diet-...

2024-05-23 | MTBLS2085 | MetaboLights

Gene expression profiling of laparoscopic donor nephrectomy samples compared to healthy control kidneys

We compared gene expression profiles from six donor kidneys prior to surgical manipulation to six kidneys removed after laparoscopic donor nephrectomy (LDN) and several hours of CO2 pneumoperitoneum. Biopsies were obtained from renal cortex and hybridized to Affymetrix HG-U133A GeneChips. For cont...

ORGANISM(S): Homo sapiens

2005-09-14 | E-GEOD-3297 | biostudies-arrayexpress

Identification of novel PIKFYVE gene mutations associated with Fleck corneal dystrophy.

Not available

S-EPMC4575904 | biostudies-literature

Lysine Acetylation Dynamics - The Tec Kinase-Regulated Phosphoproteome Reveals a Mechanism for the Regulation of Inhibitory Signals in Murine Macrophages

Cultured carcinoma cells were stimulated with growth factors and lysine acetylation and/or tyrosine phosphorylation dynamics were quantified.

ORGANISM(S): Homo sapiens (Human)

2016-04-11 | PXD002013 | Pride

Tyrosine phosphorylation Lysine acetylation

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131 Results

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