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GenomicsVanessa cardui
Vanessa cardui, whole-genome resequencing for genotyping of ivory lncRNA crispants
PRJNA1031670 | ENA
TranscriptomicsInter- and intra-lineage genetic diversity of wild-type Zika viruses reveals both common and distinctive nucleotide variants and clusters of genomic diversity
ZIKV strains belong to three phylogenetic lineages: East African, West African, and Asian/American. RNA virus genomes exist as populations of genetically-related sequences whose heterogeneity may impact viral fitness, evolution, and virulence. The genetic diversity of representative ZIKVs (N=7) fro...
ORGANISM(S): Zika virus 
2019-07-30 | E-MTAB-7771 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Streptococcus pneumoniae wild type and Rgg mutants in aerobic and anaerobic conditions
Data is also available from http://bugs.sgul.ac.uk/E-BUGS-70
ORGANISM(S): Streptococcus pneumoniae 
2009-10-12 | E-BUGS-70 | biostudies-arrayexpress
TranscriptomicsA single master regulatory gene optix underlies both color and iridescence in butterflies
It is debated to what extent individual regulatory genes might underlie non-gradualistic evolution of complex morphological traits. We have shown that a single regulatory gene, optix, is required for development of all color and iridescence in nymphalid butterfly wings by CRISPR/Cas9 genome editing....
ORGANISM(S): Vanessa cardui Junonia coenia 
2018-01-15 | GSE98678 | GEO
TranscriptomicsExpression data from an Avian pathogenic Escherichia coli strain
Avian pathogenic Escherichia coli strains frequently cause extra-intestinal infections and are responsible for significant economic losses in the poultry industry worldwide. APEC isolates are closely related to human extraintestinal pathogenic E.coli strains and may also act as pathogens for humans....
ORGANISM(S): Escherichia coli 
2010-09-09 | E-GEOD-21893 | biostudies-arrayexpress
MetabolomicsCharacterization of trotter horses urine metabolome by means of proton nuclear magnetic resonance spectroscopy
BACKGROUND: Metabolomics has been recognized as a powerful approach for disease screening. In order to highlight potential health issues in subjects, a key factor is the possibility to compare quantitatively the metabolome of their biofluids with reference values from healthy individuals. Such effor...
2019-02-12 | MTBLS675 | MetaboLights
TranscriptomicsEvidence that cryptic promoters occur extensively throughout the Saccharomyces cerevisiae genome
Microarray analysis was used to identify all cryptic promoters in the S. cerevisiae genome that are activated in spt6 and spt16 mutants. These experiments showed that cryptic initiation is widespread, occurring in approximately 1,000 genes. We generated 2 microarray profiles from fluor-rev...
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-16 | E-GEOD-12272 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse POR-null and wild type jejunum response to quercetin
Using mice deficient in hepatic cytochrome-P450 oxidoreductase (POR), which disables the liver cytochrome P450 system, the metabolism and biological response of the anti-carcinogenic flavonoid, quercetin, was examined. Profiling circulating metabolites revealed similar profiles over 72 h in wild typ...
ORGANISM(S): Mus musculus 
2008-06-13 | E-GEOD-4258 | biostudies-arrayexpress
TranscriptomicsEffects of sidA and AHL on EHEC virulence
A study on the effects of an sdiA mutant and the AHL molecule on the virulence of EHEC Comparison of wild type E. coli 8624 with and without AHL to and E. coli 8624 sdiA mutant with and without AHL to determine the effects of each factor on gene expression
ORGANISM(S): Escherichia coli 
2010-04-09 | E-GEOD-13562 | biostudies-arrayexpress
GenomicsAndrogen receptor uses relaxed response element stringency for selective chromatin binding and transcriptional regulation in vivo
We report the in vivo androgen receptor (AR) binding sites in caput epididymis of intact SPARKI and wild-type mice using ChIP-sequencing. SPARKI (specificity affecting androgen receptor knock-in) mouse line has the second zinc finger of AR replaced by that of glucocorticoid receptors. In vivo analys...
ORGANISM(S): Mus musculus 
2014-01-21 | E-GEOD-51106 | biostudies-arrayexpress
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