Wong A A - OmicsDI

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Unknown (22228)
Transcriptomics (568)
Proteomics (373)
Genomics (222)
Metabolomics (31)
Genomic (12)
Models (4)
Clinical (1)
Other (1)

Organisms

Homo sapiens (578)
Mus musculus (245)
Saccharomyces cerevisiae (25)
Arabidopsis thaliana (24)
Rattus norvegicus (23)
Plasmodium falciparum (16)
Caenorhabditis elegans (12)
Danio rerio (11)
Plasmodium falciparum 3D7 (9)
Escherichia coli (9)
Gallus gallus (5)
Drosophila melanogaster (5)
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uncultured marine microorganism (1)
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Amphimedon queenslandica (1)
Saccharomyces pastorianus Weihenstephan 34/70 (1)
Aspergillus flavus (1)
Human adenovirus 40 (1)
Saccharomyces mikatae (1)

Organisms

Mus musculus (17)
Homo sapiens (13)
Plasmodium falciparum 3D7 (6)
Arabidopsis thaliana (4)
Plasmodium falciparum (3)
Rattus norvegicus (2)
Macaca mulatta (1)
Caenorhabditis elegans (1)
Sus scrofa (1)
Medicago truncatula (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (608)
pride (273)
EGA (116)
ENA (58)
MassIVE (54)
iProX (31)
MetaboLights (28)
dbGaP (12)
geo (9)
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GNPS (3)
GPMDB (1)
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Tissue

Cell culture (54)
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Lung (9)
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Bone marrow (3)
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Embryonic stem cell (3)
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Monocyte (3)
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Whole body (3)
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Egg (2)

Disease

Colon cancer (11)
Disease free (11)
Breast cancer (7)
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Acute leukemia (4)
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Normal (3)
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COVID-19 (2)
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Melanoma (2)
Mitochondrial metabolism disease (2)
Multiple sclerosis (2)
Pediatric onset (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Lung Cancer (1)
Metastatic colorectal cancer (1)
Lymphoblastic leukemia (1)
Respiratory syncytial virus infection (1)
Peripheral neuropathy (1)
Ovarian carcinoma (1)
Infected with Drechmeria coniospora (1)
Not infected (1)
Lung squamous cell carcinoma (1)
Prostate carcinoma (1)
Adenocarcinoma (1)
Screening intervention for colorectal cancer prevention (1)
Not Available (1)

Technology Type

Mass Spectrometry (273)
Shotgun proteomics (152)
Bottom-up proteomics (49)
Affinity purification coupled with mass spectrometry proteomics (47)
Mass spectrometry (24)
Data-dependent acquisition (21)
Gel-based experiment (16)
Data-independent acquisition (10)
Top-down proteomics (9)
SRM/MRM (7)
SWATH MS (7)
Illumina HiSeq 2000 (4)
Mass spectrometry assay (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
HDMSE (3)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina MiSeq, ILLUMINA (1)
NMR spectroscopy (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
MSE (1)
Metaproteomics (1)
Olink affinity proteomics (1)
PAcIFIC (1)

Instrument Platform

TripleTOF 6600 (22)
Orbitrap Fusion Lumos (12)
NextSeq 500 (7)
LTQ Orbitrap Elite (7)
Illumina HiSeq 2500 (6)
Illumina HiSeq 2000 (4)
Q Exactive Plus (4)
TimsTOF Pro 2 (4)
Illumina NovaSeq 6000 (3)
LTQ FT (3)
ScanArray 4000XL [PerkinElmer] (2)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 platform (1)
Agilent microarray Scanner (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
Agilent miRNA Complete Labeling and Hyb Kit (1)
Extraction kit (1)
Agilent Bioanalyzer (1)
Gene Titan (1)
GeneChip Scanner 3000 7G (1)
418 [Affymetrix] (1)
Illumina Genome Analyzer II (1)
Affymetrix (1)
BGISEQ-500 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
LCQ Classic (1)
Instrument (1)
6540 Q-TOF LC/MS (1)
Agilent 7890A GC with 5975C inert XL MSD (1)

Publication Date

2013 (80)
2010 (78)
2011 (74)
2012 (67)
2025 (66)
2022 (66)
2014 (61)
2008 (59)
2015 (56)
2021 (54)
2023 (49)
2020 (42)
2019 (42)
2024 (41)
2016 (37)
2009 (34)
2026 (27)
2007 (22)
2017 (19)
2018 (18)
2006 (11)
2005 (8)
2004 (6)

UNIPROT ID/AC

P0A9M8 (1)
P27550 (1)

CHEBI ID

CHEBI:15891 (7)
CHEBI:16335 (6)
CHEBI:17596 (6)
CHEBI:17750 (6)
CHEBI:18211 (6)
CHEBI:28044 (6)
CHEBI:30769 (6)
CHEBI:6650 (6)
CHEBI:7916 (6)
CHEBI:15428 (5)
CHEBI:15611 (5)
CHEBI:16680 (5)
CHEBI:16704 (5)
CHEBI:16750 (5)
CHEBI:16811 (5)
CHEBI:16919 (5)
CHEBI:17012 (5)
CHEBI:17126 (5)
CHEBI:17568 (5)
CHEBI:17748 (5)
CHEBI:26271 (5)
CHEBI:27897 (5)
CHEBI:28300 (5)
CHEBI:29016 (5)
CHEBI:15318 (4)
CHEBI:15354 (4)
CHEBI:15741 (4)
CHEBI:15350 (1)
CHEBI:15351 (1)
CHEBI:30089 (1)

Metabolite Name

N-acetylputrescine (4)
Putrescine (4)
(-)-epigallocatechin (3)
1-Octen-3-ol (3)
2'-deoxycytidine (3)
Adenosine (3)
Alanine (3)
Alpha-tocopherol (3)
Asparagine (3)
Aspartate (3)
Beta-alanine (3)
Citrulline (3)
Creatine (3)
Cytidine (3)
Fumarate (3)
Geraniol (3)
Glycine (3)
Isoleucine (3)
Linalool (3)
Ornithine (3)
Phenylalanine (3)
Proline (3)
Spermidine (3)
Spermine (3)
Taurine (3)
Threonine (3)
Thymidine (3)
Tryptophan (3)
Uridine (3)
Xanthine (3)

First Public Date

2014 (24)
2025 (4)
2019 (4)
2018 (4)
2023 (3)
2021 (3)
2017 (3)
2013 (3)
2026 (2)
2024 (2)
2022 (2)
2020 (2)
2015 (2)

Modelling Approach

Computational model (2)
Ordinary differential equation model (1)

Study status

Active, not recruiting (1)

Lab affiliation

The University of Melbourne (9)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (4)
Dept. of Laboratory Medicine, University of California, San Francisco, CA (3)
Functional Proteomics, ICR (3)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology and Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Science. Guangzhou, China (2)
Chemical and Biological Engineering Department, The Hong Kong University of Science and Technology (HKUST) (2)
Clinical Reaseach center for Reproduction and Genetics in Hunan Province, Reproductive and Genetic Hospital of CITIC-XIANGYA, Changsha, Hunan, China (2)
Department of Biochemistry & Pharmacology, University of Melbourne, Australia (2)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, Australia (2)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC, Australia. (2)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (2)
Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK. (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Head of Laboratory of Neuro-Oncology, Neurology, Clinical & Cancer Proteomics (2)
Lee Kong Chian School of Medicine, School of Biological Sciences, Nanyang Technological University, Singapore (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchatel, Switzerland (2)
Proteomics facility, Central Science Laboratory, University of Tasmania (2)
School of Biomedical Sciences, Faculty of Medicine and Health, UNSW Sydney (2)
School of Biomedical Sciences, The Chinese University of Hong Kong (2)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia (2)
School of Optometry, The Hong Kong Polytechnic University (2)
Senior Director, Dynamic Omics, CGR, One Medimmune Way Gaithersburg, MD 20878 (2)
The Chinese University of Hong Kong (2)
The Hong Kong Polytechnic University (2)
-Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia -Department of Molecular and Translational Science, Monash University, Clayton, Victoria, Australia (1)
1. Department of Renal Medicine, Flinders Medical Centre, South Australia, Australia. 2. College of Medicine and Public Health, Flinders University, South Australia, Australia. (1)
1. Tuberculosis Research Program Centenary Institute, The University of Sydney, Camperdown, NSW 2050, Australia 2. The University of Sydney, Discipline of Infectious Diseases & Immunology and Sydney Institute for Infectious Diseases, Camperdown, NSW 2050, Australia (1)

IsPrivate

False (4)

Submitter Keywords

Ersilia (2)
FAIR-AIML (2)
Machine Learning Model (2)

Classification

protozoa (9)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
4x(2)H labeled dimethylated L-lysine (2)
N6 (2)
N6-dimethyl-L-lysine (2)
Not available (2)
0.984016 (1)
14.01565 (1)
15.994915 (1)
19.989829 (1)
28.0313 (1)
3.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (413)
RNA-seq of coding RNA (45)
ChIP-seq (42)
Unknown experiment type (21)
Comparative genomic hybridization by array (16)
Methylation profiling by array (14)
RNA-seq of non coding RNA (9)
ChIP-chip by tiling array (5)
RNAi profiling by array (4)
Genotyping by array (4)
Other (4)
RNA-seq of coding RNA from single cells (4)
Methylation profiling by high throughput sequencing (4)
Animal - High-throughput sequencing (3)
Animal - One-color microarray (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
Human - Methylation microarray (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
ATAC-seq (1)
Interventional (1)

Release Date

2022 (2577)
2023 (2299)
2021 (2246)
2025 (2237)
2024 (1950)
2020 (1746)
2019 (1347)
2018 (1330)
2017 (1117)
2016 (1045)
2015 (950)
2014 (791)
2013 (572)
2012 (458)
2011 (454)
2010 (386)
2026 (342)
2009 (269)
2008 (209)
2007 (123)
2006 (99)
2005 (87)
2004 (52)
2003 (35)
2002 (27)
2001 (22)
2000 (22)
1998 (19)
1999 (14)
1997 (8)

Location

Canada (1)

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Metabolic profiling of prostate cancer in skeletal microenvironments identifies G6PD as a key mediator of growth and survival

The spread of cancer to bone is invariably fatal, with complex cross-talk between tumor cells and the bone microenvironment responsible for driving disease progression. By combining in silico analysis of patient datasets with metabolomic profiling of prostate cancer cells cultured with bone cells...

2024-08-19 | MTBLS3973 | MetaboLights

CAPTURE2.0 pull-down of SINE-MIR associated proteins in mouse embryonic stem cells

In mouse embryonic stem cells, the regulators of transposable elements are not well known. Here, we studied the proteins regulating mammalian-wide interspersed repeat (MIR), a short-interspersed nuclear elements (SINE) family using the CAPTURE2.0 system. We generated cell lines expressing biotinylat...

ORGANISM(S): Mus musculus (Mouse)

2025-04-01 | PXD062330 | Pride

P. falciparum (lab strain DD2) treated with A23187 vs untreated [CGH]

Calcium is a universal second messenger molecule which plays a significant role in several biological processes. Presence of calcium sensors (calmodulins) and calcium-dependent protein kinases in Plasmodium species suggests an important role of calcium-dependent signaling pathways in the regulation ...

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33764 | biostudies-arrayexpress

P. falciparum (lab strain 3d7) schizonts treated with A23187 vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33797 | biostudies-arrayexpress

P. falciparum (lab strain 3d7) schizonts untreated control vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33795 | biostudies-arrayexpress

P. falciparum (lab strain DD2) treated with ionomycin vs untreated [CGH]

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33605 | biostudies-arrayexpress

extracellular calcium chelation experiment_P. falciparum (lab strain 3d7) schizonts treated with ionomycin vs P. falciparum (lab strain 3d7) reference RNA pool