Woo D D - OmicsDI

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Unknown (1316)
Transcriptomics (92)
Proteomics (63)
Genomics (10)
Metabolomics (8)
Genomic (1)
Other (1)

Organisms

Homo sapiens (68)
Mus musculus (30)
Arabidopsis thaliana (13)
Lepidium sativum (2)
Oryza sativa Japonica Group (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Bos taurus (2)
Rattus norvegicus (2)
Danio rerio (2)
Bradyrhizobium diazoefficiens USDA 110 (1)
Brassica rapa subsp. pekinensis (1)
Eimeria tenella (1)
Daphnia magna (1)
Oryza sativa (1)
Nicotiana tabacum (1)
Glycine max (1)
Gallus gallus (1)
Corynebacterium glutamicum ATCC 13032 (1)
Saccharomyces cerevisiae (1)
Acinetobacter baumannii A424 (1)
Bacteria (1)
Octopus vulgaris (1)
Onchocerca ochengi (1)

Repository

biostudies-arrayexpress (99)
pride (35)
PAXDB (18)
MetaboLights (8)
MassIVE (5)
EGA (3)
jPOST (2)
PanoramaPublic (2)
dbGaP (1)
GPMDB (1)
iProX (1)

Tissue

Cell culture (8)
Brain (6)
Cell suspension culture (3)
Epithelial cell (3)
Erythrocyte (3)
Macrophage (3)
Blood (2)
Blood cell (2)
Breast (2)
Kidney (2)
T cell (2)
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Prefrontal cortex (1)

Disease

Alzheimer's disease (5)
Breast cancer (3)
Systemic juvenile idiopathic arthritis (1)
Not Available (1)
Arrhythmia (1)
Bacterial infectious disease (1)
Bladder transitional cell carcinoma (1)
Breast secretory carcinoma (1)
Disease free (1)
Mental depression (1)
Multiple myeloma (1)
Onchocerciasis (1)
Pancreatic intraductal papillary-mucinous neoplasm (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (24)
Mass spectrometry (7)
Bottom-up proteomics (7)
Data-dependent acquisition (4)
Data-independent acquisition (2)
Gel-based experiment (2)
SRM/MRM (2)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - positive - reverse phase (2)
Unix (1)
418 [Affymetrix] (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
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Xevo G2 Q-Tof (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Nuclear Magnetic Resonance (NMR) (1)

Publication Date

2014 (34)
2012 (18)
2013 (14)
2011 (11)
2010 (10)
2015 (9)
2018 (8)
2026 (6)
2024 (6)
2020 (6)
2008 (6)
2022 (6)
2017 (5)
2025 (5)
2023 (4)
2016 (4)
2021 (4)
2019 (4)
2007 (3)
2009 (2)
2006 (1)
2004 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

CHEBI ID

CHEBI:15741 (3)
CHEBI:28044 (3)
CHEBI:6650 (3)
CHEBI:15366 (2)
CHEBI:15428 (2)
CHEBI:15756 (2)
CHEBI:16359 (2)
CHEBI:16811 (2)
CHEBI:16828 (2)
CHEBI:16865 (2)
CHEBI:17148 (2)
CHEBI:17497 (2)
CHEBI:17596 (2)
CHEBI:17754 (2)
CHEBI:17822 (2)
CHEBI:17992 (2)
CHEBI:18019 (2)
CHEBI:18186 (2)
CHEBI:18257 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:27897 (2)
CHEBI:28716 (2)
CHEBI:28757 (2)
CHEBI:28834 (2)
CHEBI:28865 (2)
CHEBI:30769 (2)

Metabolite Name

Glyceric acid (2)
L-Tryptophan (2)
Malic acid (2)
Ornithine (2)
Palmitic acid (2)
Palmitoleic acid (2)
Succinic acid (2)
(9Z,11E,13E,15Z)-4-Oxo-9,11,13,15-octadecatetraenoic acid (1)
(E)-3-Hexadecenoic acid (1)
(Z)-4',6-Dihydroxyaurone 6-glucoside (1)
(±)4-Hydroxymephenytoin (1)
1,2-Di-(9Z,12Z,15Z-octadecatrienoyl)-3-(Galactosyl-alpha-1-6-Galactosyl-beta-1)-glycerol (1)
1-(10Z-Heptadecenoyl)-sn-glycero-3-phospho-(1'-myo-inositol) (1)
1-(1Z-hexadecenyl)-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-hydroxy-sn-glycero-3-PE (1)
13-OxoODE (1)
13Z-Docosenamide (1)
16-Hydroxy-10-oxohexadecanoic acid (1)
1H-Indole-3-acetamide (1)
2,3-Dihydro-2,3-dihydroxy-4-(4-methoxyphenyl)-1H-phenalen-1-one (1)
2-Hydroxybutyric acid (1)
2-Phenylglycine (1)
2-methyl-Butanoic acid (1)
3,4-dihydroxybenzaldehyde (1)
3-3-Hydroxyphenyl-3-hydroxypropanoic acid (1)
3-Aminoisobutanoic acid (1)
3-Hydroxybutyric acid (1)
3-Hydroxyisovaleric acid (1)
3-Hydroxyphenylacetic acid (1)
3-Indoleacetonitrile (1)

Study type

Transcription profiling by array (70)
RNA-seq of coding RNA (13)
ChIP-seq (5)
Transcription profiling by tiling array (3)
Unknown experiment type (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Genotyping by array (1)
Comparative genomic hybridization by array (1)

Release Date

2022 (165)
2025 (136)
2021 (131)
2020 (117)
2024 (109)
2023 (107)
2019 (91)
2015 (71)
2018 (71)
2017 (70)
2014 (66)
2016 (65)
2013 (47)
2012 (38)
2010 (33)
2011 (29)
2026 (27)
2008 (11)
2009 (10)
2007 (8)
2006 (5)
2002 (3)
2005 (2)
2004 (1)
2001 (1)
2000 (1)

Lab affiliation

Department of Chemistry and Chemical Biology, Harvard University (4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (4)
Departments of Biomedical Sciences, Seoul National University, Seoul, Korea (2)
Proteomics core facility, Seoul National University Hospital (2)
Baylor College of Medicine Houston, Texas (1)
Center for Translational Biomedical Research, University of North Carolina at Greensboro (1)
DEPARTMENT of CHEMISTRY & CHEMICAL BIOLOGY, HARVARD UNIVERSITY (1)
Department of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea (1)
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA (1)
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA (1)
Department of Chemistry and Chemical Biology, Harvard University, Cambrige, MA (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool. Liverpool, UK. (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Medicine, Vanderbilt University Medical Center, United States (1)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia; Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia (1)
Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR USA (1)
Department of Pharmaceutical Sciences, Northeast Ohio Medical University, Rootstown, OH (1)
Instituto de Acuicultura Torre de la Sal (IATS-CSIC), 12595 Ribera de Cabanes, Castellón, Spain (1)
Johns Hopkins University (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Proteomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (1)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (1)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital, 101 Daehak-ro, Seoul, Korea (1)
Proteomics core facility, Biomedical research institute, Seoul National University Hospital (1)
Proteomics core facility, Biomedical research institute, Seoul national university hospital (1)
Section Mass Spectrometry and Proteomics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
institute of medical and biological engineering, Seoul National University College of Medicine (1)

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A chemoproteomics approach to profile phospholipase D-derived phosphatidyl alcohol interactions

Alcohol consumption leads to formation of phosphatidylethanol (PEth) via the transphosphatidylation activity of phospholipase D (PLD) enzymes. Though this non-natural phospholipid routinely serves as a biomarker of chronic alcoholism, its pathophysiological roles remain unknown. We use a minimalist ...

ORGANISM(S): Homo sapiens (Human)

2024-01-04 | PXD029749 | Pride

Molecular and Functional Characterization of the role of RNA silencing components in Cryptococcus neoformans [RNAi_Serotype D]

The RNA interference (RNAi) mediated by homology-dependent degradation of the target mRNA with small RNA molecules plays a key role in controlling transcription and translation processes in a number of eukaryotic organisms. The RNAi machinery is also evolutionarily conserved in a wide variety of fun...

ORGANISM(S): Cryptococcus neoformans var. neoformans JEC21

2010-05-01 | E-GEOD-21177 | biostudies-arrayexpress

Effects of tall alleles SD1-in and SD1-ja to the dwarfing allele sd1-d originating from 'Dee-geo-woo-gen' on yield and related traits on the genetic background of indica IR36 in rice.

Not available

S-EPMC8573555 | biostudies-literature

Use of the Puccinia sorghi haustorial transcriptome to identify and characterize AvrRp1-D recognized by the maize Rp1-D resistance protein.

Not available

S-EPMC11578463 | biostudies-literature

The role of the Ras- and cAMP-signaling pathways in stress response and sterol biosynthesis in Cryptococcus neoformans

The cAMP-pathway plays a central role in regulation of growth, differentiation, and virulence of human pathogenic fungi, including Cryptococcus neoformans. Three major upstream signaling regulators of the adenylyl cyclase (Cac1), Ras, Aca1 (Adenylyl cyclase-associated protein 1) and G-alpha subunit ...

ORGANISM(S): Cryptococcus neoformans var. grubii H99

2010-05-22 | E-GEOD-17338 | biostudies-arrayexpress

Conversion of Glycosylated Platycoside E to Deapiose-Xylosylated Platycodin D by Cytolase PCL5.

Not available

S-EPMC7072768 | biostudies-literature

Association of Circulating 25(OH)D and Lower Urinary Tract Symptoms: A Four-Year Prospective Study among Elderly Chinese Men.

Not available

S-EPMC4882686 | biostudies-literature

Itch and autophagy-mediated NF-κB activation contributes to inhibition of cathepsin D-induced sensitizing effect on anticancer drugs

Not available

S-EPMC9205942 | biostudies-literature

Phase II Study of Hemithoracic Intensity-Modulated Pleural Radiation Therapy (IMPRINT) As Part of Lung-Sparing Multimodality Therapy in Patients With Malignant Pleural Mesothelioma.