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UnknownBehavioral and mechanistic characteristics of the predator-prey interaction between the dinoflagellate Dinophysis acuminata and the ciliate Mesodinium rubrum.
Not available
S-EPMC6089243 | biostudies-literature
TranscriptomicsSeasonal differences in expression patterns of LMPC-enriched poplar wood rays
Ray cells were enriched from wood samples of poplar (Populus x canescens) by LMPC and transcripts monitored by poplar whole genome microarrays. Results provided insight into molecular processes during the transition from dormancy to flowering in early spring in contrast to the active growth phase in...
ORGANISM(S): Populus tremula x Populus alba 
2012-12-05 | E-GEOD-33977 | biostudies-arrayexpress
MetabolomicsEvidence for quorum sensing and differential metabolite production by Ruegeria pomeroyi in response to DMSP
Microbial alteration and remineralization of organic matter in the ocean play essential roles in the carbon cycle. The impact of individual compounds as either growth substrates or infochemicals is still poorly constrained in models, particularly for organisms with relatively versatile genomes. Here...
2015-01-29 | MTBLS157 | MetaboLights
ProteomicsThe ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean
Untargeted proteomics from a 5,000 km+ transect across the central Pacific Ocean from Hawaii to Tahiti. The expedition crossed multiple biogeochemical provinces, inlcuding the oligotrophic North Pacific Subtropical Gyre, the extremety of the Eastern Tropical North Pacific Oxygen Deficient Zone, and ...
ORGANISM(S): marine metagenome 
2022-08-31 | PXD030684 | Pride
Microbial ecology Mesopelagic Oxygen minimum zone Equatorial upwelling Oxygen deficient zone Nitrification Ocean Marine Pelagic 
UnknownDiversity and toxicity of the diatom Pseudo-nitzschia Peragallo in the Gulf of Maine, Northwestern Atlantic Ocean.
Not available
S-EPMC4133141 | biostudies-literature
TranscriptomicsRegulation of gene expression during the onset of ligninolytic oxidation by Phanerochaete chrysosporium on colonized wood
The biodegradation of lignocellulose requires the disruption of its lignin, which shields the metabolically assimilable polysaccharides in this recalcitrant natural composite. Although a variety of microorganisms can attack lignocellulose, white rot basidiomycetes are uniquely efficient at this proc...
ORGANISM(S): Phanerochaete chrysosporium 
2015-09-16 | E-GEOD-69461 | biostudies-arrayexpress
MetabolomicsDissolved organic matter produced by Thalassiosira pseudonana
Phytoplankton are significant producers of dissolved organic matter (DOM) in marine ecosystems but the identity and dynamics of this DOM remain poorly constrained. Knowledge on the identity and dynamics of DOM are crucial for understanding the molecular-level reactions at the base of the global carb...
2014-12-12 | MTBLS144 | MetaboLights
UnknownDynamics of the most common pathogenic mtDNA variant m.3243A > G demonstrate frequency-dependency in blood and positive selection in the germline.
Not available
S-EPMC9703810 | biostudies-literature
TranscriptomicsTranscriptomic shifts in rice roots in response to Cr (VI) stress
Detailed analysis of genome-wide transcriptome profiling in rice root is reported here, following Cr-plant interaction. Such studies are important for the identification of genes responsible for tolerance, accumulation and defense response in plants with respect to Cr stress. Rice root metabolome an...
ORGANISM(S): Oryza sativa Indica Group 
2010-11-11 | E-GEOD-25206 | biostudies-arrayexpress
MetabolomicsTargeted metabolomics data from two freshwater strains of SAR11
In an abundant aquatic groups of microorganisms, SAR11, the transition between salt- and freshwater environments has happened only once: all freshwater SAR11 belong to subclade IIIb/LD12, which has also been found to inhabit coastal environments where salinity varies widely. The first reported isola...
2023-05-09 | MTBLS6991 | MetaboLights
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