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TranscriptomicsRegulation of gene expression during the onset of ligninolytic oxidation by Phanerochaete chrysosporium on colonized wood
The biodegradation of lignocellulose requires the disruption of its lignin, which shields the metabolically assimilable polysaccharides in this recalcitrant natural composite. Although a variety of microorganisms can attack lignocellulose, white rot basidiomycetes are uniquely efficient at this proc...
ORGANISM(S): Phanerochaete chrysosporium 
2015-09-16 | E-GEOD-69461 | biostudies-arrayexpress
MetabolomicsEvidence for quorum sensing and differential metabolite production by Ruegeria pomeroyi in response to DMSP
Microbial alteration and remineralization of organic matter in the ocean play essential roles in the carbon cycle. The impact of individual compounds as either growth substrates or infochemicals is still poorly constrained in models, particularly for organisms with relatively versatile genomes. Here...
2015-01-29 | MTBLS157 | MetaboLights
TranscriptomicsComparative analysis of genomic features of human HIV-1 infection and primate models of SIV infection
High levels of HIV-1 replication during the chronic phase of infection are usually associated with rapid disease progression (RP). However, a minority of HIV-infected individuals remain asymptomatic and show persistently high CD4+ T cell counts despite high viremia for many years (viremic non progre...
ORGANISM(S): Homo sapiens 
2011-06-03 | E-GEOD-28128 | biostudies-arrayexpress
TranscriptomicsPostia placenta MAD-698 gene expression in different media
Transscript profiles of Postia placenta grown on different substrates were analyszed. Array design was based on the DoE's Joint Genome Institute's gene models for P. placenta version 1. The research goal is to identtify genes essential for cellulose depolymerization. Keywords: Culture condition com...
ORGANISM(S): Postia placenta 
2010-05-14 | E-GEOD-12540 | biostudies-arrayexpress
TranscriptomicsExpression data from plant tissues during incompatible interaction between the rice host and its major pest, the Asian rice gall midge
During an incompatible or compatible interaction between rice (Oryza sativa) and the Asian rice gall midge (Orseolia oryzae), a lot of genetic reprogamming occurs in the plant host We used microarray to know the changes occuring in the resistant host (indica rice variety RP2068-18-3-5) when challeng...
ORGANISM(S): Oryza sativa 
2016-02-23 | E-GEOD-70526 | biostudies-arrayexpress
TranscriptomicsPhanerochaete chrysosporium gene expression on different substrates
Using whole genome microarrays based on the annotated genomes of Phanerochaete chrysosporium, we monitored the changes in its transcriptomes relevant to cell wall degradation during growth on three chemically distinct Populus trichocarpa (poplar) wood substrates. Results of this study are sumbitted ...
ORGANISM(S): Phanerochaete chrysosporium 
2015-05-19 | E-GEOD-69008 | biostudies-arrayexpress
MetabolomicsA Phosphate starvation response gene (psr1-like) is present in Micromonas pusilla and other marine algae and coordinates the metabolic response to phosphate deficiency
Both marine phytoplankton and terrestrial plants have to deal with limited bioavailability of the key life nutrient, phosphate. In freshwater algae and plants, a phosphate starvation response gene (psr1) has been characterized, which encodes for a transcription factor that regulates the metabolic re...
2016-02-01 | MTBLS295 | MetaboLights
MetabolomicsPhosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton
Phosphorus limitation is pervasive in the oligotrophic surface ocean and marine microorganisms use different strategies to survive, and thrive, at these low nutrient levels. Eukaryotic algae such as diatoms are extremely sensitive to phosphorus limitation and recent transcriptomics work has suggeste...
2015-01-27 | MTBLS154 | MetaboLights
MetabolomicsIntracellular metabolites from an experimental manipulation of marine microorganisms
The marine environment holds one of the largest pools of reduced organic carbon on Earth. Within this organic carbon are metabolites produced as a result of microbial activity. This project considers the effects of predation and viral lysis on the metabolites found in the surface ocean. Using seawat...
2017-05-23 | MTBLS461 | MetaboLights
UnknownImpact of Infliximab-dyyb (Infliximab Biosimilar) on Clinical and Patient-Reported Outcomes: 1-Year Follow-up Results from an Observational Real-World Study Among Patients with Inflammatory Bowel Disease in the US and Canada (the ONWARD Study).
Not available
S-EPMC9056488 | biostudies-literature
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