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Unknown (1298)
Proteomics (155)
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Methylation profiling (1)

Organisms

Allexis (130)
Arabidopsis thaliana (130)
Callinectes sapidus (130)
Danio rerio (130)
Drosophila (130)
Drosophila melanogaster (130)
Homo sapiens (63)
Mus musculus (32)
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aerosol metagenome (1)
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pride (130)
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Tissue

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Disease

Breast cancer (6)
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Inflammatory bowel disease 7 (1)
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Obesity (1)
Parkinson's disease (1)
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Systemic scleroderma (1)

Technology Type

Mass Spectrometry (130)
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HDMSE (2)
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All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
Metaproteomics (1)
SomaScan affinity proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (17)
Illumina HiSeq 4000 (14)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (5)
Illumina HiSeq 2500 (5)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (4)
See manuscript (3)
FastPrep‑24 homogenizer (MP Biomedicals) (2)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (2)
Illumina NovaSeq X (2)
DNBSEQ-T7 (2)
MinION (2)
NextSeq 550 (2)
Nanodrop (1)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
Dr. Tom Multi-omics Data Mining System (1)
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Centrifuge, Nucleic Acid Quantification Instrument (1)
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HPC (1)
NEXTflex small RNA library preparation kit v4; TruSeq exome RNA library preparation kit (Illumina); High Sensitivity DNA ScreenTape D1000 (1)
QIAzol and miRNeasy micro kits; Bioanalyzer TapeStation 2100; Qubit microRNA assay (1)
Sequel II (1)
The VDJ NextGEM v1.1 10x Genomics Chromium kit (1)
The Miltenyi Biotec Human Tumor Dissociation kit (cat# 130-095-929) (1)
RapidPURE RNA Plant Kit (MP Biomedicals, Illkirch, France) (1)
FastPrep-24 homogeniser (1)
None (1)
Sequel (1)

Publication Date

2026 (63)
2025 (45)
2022 (38)
2024 (27)
2023 (27)
2021 (22)
2019 (17)
2020 (14)
2018 (12)
2017 (10)
2013 (9)
2014 (8)
2012 (5)
2011 (5)
2016 (5)
2015 (4)
2008 (2)
2010 (1)
2009 (1)

CHEBI ID

CHEBI:16737 (5)
CHEBI:70959 (4)
CHEBI:16856 (4)
CHEBI:17115 (4)
CHEBI:7916 (4)
CHEBI:46195 (4)
CHEBI:15891 (4)
CHEBI:16449 (4)
CHEBI:422 (4)
CHEBI:16704 (4)
CHEBI:17053 (4)
CHEBI:16015 (4)
CHEBI:18012 (4)
CHEBI:32816 (4)
CHEBI:16027 (4)
CHEBI:32805 (4)
CHEBI:16919 (4)
CHEBI:16414 (4)
CHEBI:15724 (4)
CHEBI:15354 (4)
CHEBI:17295 (4)
CHEBI:16828 (4)
CHEBI:5870 (3)
CHEBI:7719 (3)
CHEBI:6964 (3)
CHEBI:6651 (3)
CHEBI:18066 (3)
CHEBI:15930 (3)
CHEBI:26271 (3)
CHEBI:33282 (1)

Metabolite Name

Creatine (10)
Creatinine (9)
Taurine (8)
Choline (7)
Histamine (7)
Adenosine (6)
Cytosine (6)
Proline (6)
Uridine (6)
Hypoxanthine (6)
Histidine (5)
Tyrosine (5)
Alanine (5)
Phenylalanine (5)
L-Tryptophan (5)
Adenine (5)
Tryptophan (5)
Molinate (4)
L-Alanine (4)
Phenylacetic acid (4)
Trigonelline (4)
Betaine (4)
Glutathione (4)
L-Proline (4)
Caffeic acid (4)
N-Acetylornithine (4)
Dihydrothymine (4)
Pantothenic acid (4)
Nicotinamide (4)
Arginine (4)

First Public Date

2026 (40)
2025 (12)
2021 (9)
2024 (8)
2023 (7)
2022 (3)
2019 (3)
2018 (3)
2014 (3)
2017 (2)
2013 (2)
2020 (1)
2015 (1)

Modelling Approach

Computational model (1)

Study status

Recruiting (1)

Lab affiliation

Biological Chemistry Department, David Geffen School of Medicine, UCLA (4)
Department of Biochemistry and Biomedical Sciences McMaster University (3)
Department of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark (3)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany (3)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (3)
Quantitative Proteomics Proteome Center Tübingen Universität Tübingen Auf der Morgenstelle 15 72076 Tübingen (3)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (2)
State Key Laboratory of Bioactive Molecules and Druggability Assessment/International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of Ministry of Education (MOE) of China/College of Pharmacy, Jinan University, Guangzhou, 510632, China (2)
1) OMICS and Analytical Development Group, BIOSCOPE Research Group, LAQV REQUIMTE, Chemistry Department, NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal (1)
1CHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada 2 Department of Pathology and cellular biology, Faculty of Medicine, Universite de Montreal, QC H3T 1J4, Canada (1)
1Department of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark (1)
Aalborg University (1)
Aberystwyth University (1)
Assistant Professor, Department of Food Science and Technology, Texas A&M University, College Station, TX 77843, USA (1)
Assistant Professor, Division of Reproductive Sciences Dept. of Obstetrics, Gynecology and Reproductive Sciences University of Vermont College of Medicine 89 Beaumont Avenue, Burlington, VT 05405 USA (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Biomedical Research Institute of New Jersey (BRInj) 140 East Hanover Ave Cedar Knolls New Jersey 07927 (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
CEO, IBET, Apartado 12, 2781-901 Oeiras, Portugal Director Animal Cell Technology Unit, ITQB-UNL Inv Associate Professor, FCT-UNL (1)
Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Sciences, Paul-Wittsack Str. 10, 68163 Mannheim, Germany (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands (1)
Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada. (1)
Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Instituto Nacional de Ciência e Tecnologia em Tuberculose (INCT-TB), Programa de Pós-Graduação em Biologia Celular e Molecular - Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Porto Alegre, Brazil (1)
Chemical Sciences Division, Oak Ridge National Laboratory (1)
DIVAS, University of Milan (1)
DTU Bioengineering (1)
Department of Biochemical Sciences, Faculty of Pharmacy, Charles University, Hradec Králové, Czech Republic (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. (1)
Department of Biomedical and Clinical Sciences, Cell Biology, Medical Faculty, Linköping University. Sweden (1)

IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Classification

viruses (1)

Modification

-17.026549 (1)
-18.010565 (1)
15.994915 (1)
42.010565 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

RNA-seq of coding RNA (33)
Transcription profiling by array (21)
Animal - One-color microarray (5)
Animal - High-throughput sequencing (5)
RNA-seq of total RNA (5)
RNA-seq of coding RNA from single cells (2)
Animal - Two-color microarray (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
Other (1)
ChIP-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)
Observational (1)

Release Date

2025 (256)
2024 (185)
2022 (183)
2023 (182)
2021 (152)
2020 (103)
2026 (64)
2019 (63)
2018 (48)
2017 (41)
2015 (24)
2014 (22)
2016 (18)
2013 (15)
2012 (8)
2011 (8)
2010 (3)
2008 (3)
2009 (2)
2007 (1)

Location

Germany (1)

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Novel automated workflow for spectral alignment and mass calibration in MS imaging using a sputtered Ag nanolayer

Mass spectrometry imaging (MSI) is a technique that can map analyte spatial distribution directly onto a tissue section. This enables the spatial correlation of molecular entities with a tissue morphology to be investigated. Analyte annotation in MSI is intrinsically linked to the mass accuracy of t...

2022-01-20 | MTBLS587 | MetaboLights

MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments

This dataset reports the UPLC-QTof MS untargeted analysis of Vitis vinifera L. leaves, collected from Italy (Trentino) and Germany (Mecklenburg West-Pomerania), from two fungus-resistant grape varieties (PIWI), Regent and Phoenix. For each variety, 40 leaves were sampled from 10 plants (4 leaves/pla...

2014-11-09 | MTBLS137 | MetaboLights

Are Non-animal Systemic Safety Assessments Protective: A Toolbox and Workflow

High throughput transcriptomics using the TempO-Seq (TM) platform for dose response modelling of 3 different cell lines treated with multiple compounds as part of a study to generate a toolbox and workflow for non-animal safety assessments. The data generated here was produced as one part of a toolb...

ORGANISM(S): Homo sapiens

2025-09-15 | E-MTAB-15258 | biostudies-arrayexpress

Advancing systemic toxicity risk assessment: Evaluation of a NAM-based toolbox approach

ORGANISM(S): Homo sapiens

2025-09-15 | E-MTAB-15266 | biostudies-arrayexpress

A Workflow for Transcriptome-wide Assessment of Antisense Oligonucleotide Selectivity

PRJNA1247536 | ENA

An Advancement in Developmental and Reproductive Toxicity (DART) Risk Assessment: Evaluation of a Bioactivity and Exposure-Based NAM Toolbox

ORGANISM(S): Homo sapiens

2025-09-15 | E-MTAB-15274 | biostudies-arrayexpress

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

Direct-infusion mass spectrometry (DIMS) metabolomics is an important approach for characterising molecular responses of organisms to disease, drugs and the environment. Increasingly large-scale metabolomics studies are being conducted, necessitating improvements in both bioanalytical and computatio...

2022-05-16 | MTBLS79 | MetaboLights

A Versatile Sample Processing Workflow for Metagenomic Pathogen Detection

PRJEB27711 | ENA

ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies.

Not available

S-EPMC7299298 | biostudies-literature

Refinement of a workflow for human relevance assessment of adverse outcome pathways and associated new approach methodologies.

Not available

S-EPMC12392633 | biostudies-literature