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ProteomicsDeep Learning Powers Protein Identification from Precursor MS Information
We report the DeepMS1, an approach combining deep learning-based retention time, ion mobility, detectability prediction, and linear regression-based scoring for MS1 feature identification.
ORGANISM(S): Homo Sapiens Escherichia Coli 
2024-05-13 | PXD046171 |
ProteomicsDeep Learning Powers Protein Identification from MS1 Feature Information
We report the DeepMS1, an approach combining deep learning-based retention time, ion mobility, detectability prediction, and linear regression-based scoring for MS1 feature identification.
ORGANISM(S): Homo Sapiens Escherichia Coli 
2024-02-16 | PXD049457 |
ProteomicsAccurate Taxonomic Annotation from Metagenomic Data for Deep Metaproteomic Coverage of Microbiota
We developed an accurate taxonomic annotation strategy from metagenomic data for deep metaproteomic coverage, and also compared the performance of the state-of-the-art LC-MS/MS techniques using a simulated microbial community with 12 species. In addition, we also achieved deep proteome coverage of h...
ORGANISM(S): Enterococcus Faecalis Escherichia Coli Atcc 25922 Pseudomonas Aeruginosa Klebsiella Pneumoniae Homo Sapiens Enterococcus Casseliflavus Morganella Morganii Lactobacillus Acidophilus Clostridium Butyricum Citrobacter Freundii Complex Enterobacter Asburiae Klebsiella Aerogenes Bacteroides Fragilis 
2022-06-21 | PXD034815 |
ProteomicsHigh-Abundance Protein-Guided Hybrid Spectral Library for Data-Independent Acquisition Metaproteomics
Metaproteomics offers a direct avenue to identify microbial proteins in microbiota, enabling compositional and functional characterization of microbiota. Due to the complexity and heterogeneity of microbial communities, in-depth and accurate metaproteomics faces tremendous limitations. One challenge...
ORGANISM(S): Morganella Morganii Clostridium Butyricum Lactobacillus Acidophilus Enterococcus Faecalis Feces Metagenome Enterobacter Asburiae Pseudomonas Aeruginosa 
2023-07-19 | PXD043890 |
ProteomicsThe eWAT ubiquitinome of wild type mice and Mdm2 adipocyte-specific knock-in mice fed high-fat diet
The epididymal adipose tissue (eWAT) samples from wild type mice fed high-fat diet for 12 weeks (H_WT_E) and Mdm2 adipocyte-specific knock-in mice fed high-fat diet for 12 weeks (H_KI_E) were mixed separately, and subjected to ubiquitinome study by Label-free quantification and ubiquitination modifi...
ORGANISM(S): Mus Musculus 
2022-05-26 | PXD034127 |
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