Wu Feng F - OmicsDI

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Unknown (1843)
Proteomics (63)
Genomics (30)
Metabolomics (14)
Transcriptomics (12)
Models (1)

Organisms

Homo sapiens (34)
Schizophyllum commune H4-8 (29)
Mycobacterium tuberculosis SP7 (29)
Oryza sativa Japonica Group (29)
Candidatus Endoriftia persephonae (29)
Mycobacterium tuberculosis SP10 (29)
Mycobacterium tuberculosis SP13 (29)
Mycobacterium tuberculosis SP22 (29)
Chlamydomonas reinhardtii (29)
Enterococcus mundtii CRL35 (29)
Oncorhynchus tshawytscha (29)
Pseudomonas canadensis (29)
Strongylocentrotus purpuratus (29)
Influenza A virus (A/California/04/2009(H1N1)) (29)
Pseudomonas aeruginosa PAO1H2O (29)
Human alphaherpesvirus 1 strain 17 (29)
Quercus petraea (29)
Caenorhabditis elegans (22)
Mus musculus (7)
Escherichia coli (2)
Brassica rapa (1)
Oryza sativa (1)
Rattus norvegicus (1)
Tropilaelaps mercedesae (1)
Zea mays (1)
Drosophila melanogaster (1)
Capsicum annuum (1)
Vicia faba var. faba (1)
Oryctolagus cuniculus (1)
Apis mellifera (1)

Repository

biostudies-arrayexpress (37)
iProX (31)
pride (29)
MetaboLights (13)
EGA (5)
MassIVE (3)
BioModels (1)
GNPS (1)

Tissue

Cell culture (7)
Brain (3)
Embryonic stem cell (2)
Blood plasma (2)
Liver (2)
Uterine endometrial cancer cell (1)
Renal cortical epithelial cell (1)
Macrophage (1)
Cell suspension culture (1)
Stem cell (1)
Whole body (1)
Permanent cell line cell (1)
Epithelial cell (1)
Neutrophil (1)
Blood cell (1)

Disease

Endometrial Endometrioid Adenocarcinoma (1)
Severe acute respiratory syndrome (1)
Lymphoma (1)
Cardiovascular system disease (1)

Technology Type

Mass Spectrometry (29)
Mass spectrometry (13)
Shotgun proteomics (9)
Data-dependent acquisition (5)
Bottom-up proteomics (4)
Gel-based experiment (3)
Top-down proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Proteogenomics (1)
Data-independent acquisition (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (7)
Q Exactive (2)
Liquid Chromatography MS - positive - hilic (2)
Q Exactive Plus (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
MS Imaging - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2011 (22)
2026 (9)
2019 (9)
2022 (8)
2023 (7)
2024 (6)
2021 (6)
2025 (6)
2020 (5)
2015 (4)
2017 (4)
2014 (3)
2018 (2)
2013 (2)
2012 (2)
2005 (1)
2010 (1)
2009 (1)
2007 (1)

CHEBI ID

CHEBI:17306 (6)
CHEBI:17895 (6)
CHEBI:17596 (6)
CHEBI:90333 (5)
CHEBI:24813 (5)
CHEBI:17786 (5)
CHEBI:27732 (5)
CHEBI:18183 (5)
CHEBI:28177 (5)
CHEBI:16828 (5)
CHEBI:18050 (5)
CHEBI:17295 (5)
CHEBI:17351 (5)
CHEBI:16393 (5)
CHEBI:17203 (5)
CHEBI:18347 (5)
CHEBI:18019 (5)
CHEBI:15971 (5)
CHEBI:16015 (5)
CHEBI:17650 (5)
CHEBI:15318 (5)
CHEBI:30769 (5)
CHEBI:16704 (5)
CHEBI:32816 (5)
CHEBI:17368 (5)
CHEBI:16347 (5)
CHEBI:16296 (4)
CHEBI:28946 (4)
CHEBI:36108 (4)
CHEBI:17347 (4)

Metabolite Name

Arachidonic acid (3)
Testosterone (3)
Salicylic acid (3)
Hypoxanthine (3)
Xanthine (3)
Inosine (3)
4-Oxopentanoate (2)
N,N-dimethylglycine (2)
D-sphingosine (2)
N-acetyl-D-tryptophan (2)
L-norleucine (2)
N-Acetyl-L-leucine (2)
Pro-Leu (2)
2'-O-methylguanosine (2)
O-Phosphorylethanolamine (2)
N-Acetylaspartate (2)
N-acetyl-DL-tryptophan (2)
Sakuranetin (2)
L-histidine (2)
Lactulose (2)
Isoxanthopterin (2)
Glutarylcarnitine (2)
D-Mannitol (2)
Naringenin (2)
Valine (2)
Hippurate (2)
Pyruvic acid (2)
L-proline (2)
Pyrrole-2-carboxylic acid (2)
Leucine (2)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

ChIP-seq (24)
Transcription profiling by array (5)
RNA-seq of coding RNA (3)
ChIP-chip by tiling array (2)
Transcription profiling by RT-PCR (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (307)
2022 (276)
2024 (248)
2023 (243)
2021 (183)
2020 (141)
2019 (83)
2018 (76)
2016 (60)
2017 (58)
2015 (54)
2026 (42)
2011 (29)
2014 (28)
2013 (23)
2012 (13)
2010 (7)
2008 (4)
2009 (3)
2007 (1)
2006 (1)

Lab affiliation

SJTU (2)
Nankai University (2)
Department of Gynecological Oncology, Tongji Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
SULFAGING group, Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V., DORTMUND, GERMANy (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Mass Spectrometry & Metabolomics Facility at Westlake University (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China (1)
Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, No. 1 Beigou Xiangshan, Beijing, 100193, China (1)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (1)
Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang 310052, China (1)
Department of Parasitology, School of Basic Medical Sciences, Wenzhou Medical University, China (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 138648 Singapore, Singapore. Department of Pharmacy, National University of Singapore, 117543, Singapore, Singapore. (1)
Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
School of Life Sciences Fudan University (1)
Children's Hospital of Fudan University (1)
Institution of hydrobiology，CAS (1)
Zhengzhou University (1)
Shandong Technology Innovation Center of Molecular Targeting and Intelligent Diagnosis and Treatment, Binzhou Medical University, Yantai, China. (1)
Institute of Apicultural Research/Key Laboratory of Pollinating Insect Biology, Ministry of Agriculture, Chinese Academy of Agricultural Science, Beijing, China (1)
Institute of Apicultural Research, Chinese Academy of Agricultural Sciences (1)
ICR (1)
Zhejiang University (1)
Shanghai Jiao Tong University (1)
Institute of Apicultural Research (1)
Functional Proteomics, ICR (1)

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Wu2007_MitochondrialTCAcycle

This a model from the article: Computer modeling of mitochondrial tricarboxylic acid cycle, oxidative phosphorylation, metabolite transport, and electrophysiology. Wu F, Yang F, Vinnakota KC, Beard DA. J Biol Chem 2007 Aug 24;282(34):24525-37 1759...

2005-01-01 | MODEL1006230090 | BioModels

Eukaryotic elongation factor-1α 2 knockdown inhibits hepatocarcinogenesis by suppressing PI3K/Akt/NF-κB signaling.

Not available

S-EPMC4837440 | biostudies-literature

Adjuvant sorafenib after heptectomy for Barcelona Clinic Liver Cancer-stage C hepatocellular carcinoma patients.

Not available

S-EPMC4910659 | biostudies-literature

Comparative analysis of proteomic and metabolomic profiles of different species of Paris

An extract prepared from species of Paris is the most widely consumed herbal product in China. The genus Paris includes a variety of genotypes with different medicinal component contents but only two are defined as official sources. Closely related species have different medicinal properties beca...

2020-01-13 | MTBLS779 | MetaboLights

Bacteriophage T4 capsid as a nanocarrier for Peptide-N-Glycosidase F immobilization through self-assembly.

Not available

S-EPMC6424964 | biostudies-literature

Investigation of the Potential Mechanisms Underlying Nuclear F-Actin Organization in Ovarian Cancer Cells by High-Throughput Screening in Combination With Deep Learning.

Not available

S-EPMC9178185 | biostudies-literature

Synthesis of 5-[¹⁸F]Fluoro-α-methyl Tryptophan: New Trp Based PET Agents.

Not available

S-EPMC5436511 | biostudies-literature

Structural and mechanistic insights into the inhibition of type I-F CRISPR-Cas system by anti-CRISPR protein AcrIF23.

Not available