Wu Huang H - OmicsDI

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Unknown (10473)
Proteomics (256)
Transcriptomics (92)
Genomics (39)
Metabolomics (32)
Multiomics (2)
Genomic (1)
Other (1)

Organisms

Homo sapiens (132)
Mus musculus (39)
Escherichia coli (3)
Saccharomyces cerevisiae (3)
Rattus norvegicus (2)
Rattus rattus (2)
Pteropus alecto (1)
Bos grunniens (1)
Brassica oleracea (1)
Methanococcus maripaludis S2 (1)
Aspergillus flavus (1)
Drosophila simulans (1)
Brassica rapa (1)
Apis mellifera (1)
Oryza sativa Japonica Group (1)
Pseudomonas aeruginosa (1)
Gallus gallus (1)
Arabidopsis thaliana (1)
Drosophila melanogaster (1)
Human CSF-associated densovirus (1)
Ligilactobacillus salivarius (1)
Myricaria laxiflora (1)
Naja nivea (1)
Oryza sativa (1)
Riemerella anatipestifer RA-YM (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Serratia marcescens LCT-SM213 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Staphylococcus aureus (1)
Staphylococcus aureus subsp. aureus RN4220 (1)

Repository

pride (167)
biostudies-arrayexpress (108)
iProX (78)
MetaboLights (32)
EGA (25)
MassIVE (7)
PeptideAtlas (2)
ENA (2)
dbGaP (1)
GPMDB (1)

Tissue

Cell culture (46)
Brain (13)
Epithelial cell (13)
Whole body (9)
Liver (8)
Cell suspension culture (7)
Permanent cell line cell (6)
Blood plasma (5)
Blood serum (5)
HeLa cell (5)
Heart (5)
Stem cell (5)
B cell (4)
Embryo (4)
Kidney (4)
Lung (4)
Testis (4)
Colon (3)
Fibroblast (3)
Hepatocyte (3)
Plant cell (3)
Root (3)
T cell (3)
Brain (2)
Blood (2)
Embryonic stem cell (2)
Extracellular vesicle (2)
Oocyte (2)
Oral squamous cell carcinoma cell (2)
Ovary (2)

Disease

Breast cancer (5)
Cardiovascular system disease (4)
Glioblastoma (4)
Colon cancer (3)
Acute leukemia (2)
Disease (2)
Disease free (2)
Hepatocellular carcinoma (2)
Liver carcinoma (2)
Oral squamous cell carcinoma (2)
Prostate adenocarcinoma (2)
Severe acute respiratory syndrome (2)
Metastatic colorectal cancer (1)
Not Available (1)
Alzheimer's disease (1)
Aortic dissection (1)
Bacterial infectious disease (1)
Brain cancer (1)
Carcinoma (1)
Cervix carcinoma (1)
Cholangiocarcinoma (1)
Kidney cancer (1)
Liver cancer (1)
Lung adenocarcinoma (1)
Lung cancer (1)
Non-small cell lung carcinoma (1)
Ovarian cancer (1)
Renal cell carcinoma (1)
Skin cancer (1)

Technology Type

Mass Spectrometry (167)
Shotgun proteomics (82)
Mass spectrometry (29)
Bottom-up proteomics (24)
Data-dependent acquisition (22)
Affinity purification coupled with mass spectrometry proteomics (20)
Top-down proteomics (7)
Gel-based experiment (5)
Data-independent acquisition (4)
Proteogenomics (4)
Affinity proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry assay (2)
Immunopeptidomics (2)
Olink affinity proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (17)
Liquid Chromatography MS - positive - reverse phase (17)
Illumina NovaSeq 6000 (10)
Illumina HiSeq 4000 (4)
LTQ Orbitrap Velos (4)
Liquid Chromatography MS - positive - hilic (4)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - alternating - hilic (3)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - negative - hilic (2)
Instrument (1)
LTQ (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Xevo G2 QTOF (Waters) (1)
Bruker (1)
Liquid Chromatography MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Applied biosystems / mds sciex 4700 proteomics analyzer (1)
Applied biosystems / mds sciex q trap (1)
Applied biosystems / mds sciex qstar (1)
Thermo lcq deca (1)

Publication Date

2022 (44)
2026 (36)
2025 (35)
2023 (32)
2021 (30)
2024 (28)
2020 (20)
2013 (20)
2014 (17)
2015 (15)
2012 (14)
2011 (12)
2010 (10)
2017 (10)
2016 (8)
2019 (8)
2018 (7)
2007 (3)
2008 (2)

UNIPROT ID/AC

A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1L0T0 (2)
A2BFH1 (2)
A2NI60 (2)
A2NUT2 (2)
A2RU30 (2)
A4F255 (2)
A5A3E0 (2)
A5PKW4 (2)
A6NEL2 (2)
A6NGB9 (2)
A6NHL2 (2)
A6NNZ2 (2)
A7KAX9 (2)
A7XYQ1 (2)

ENSEMBL ID

ENSG00000170477 (2)

CHEBI ID

CHEBI:30769 (15)
CHEBI:15891 (14)
CHEBI:16040 (14)
CHEBI:16347 (14)
CHEBI:15354 (14)
CHEBI:16704 (13)
CHEBI:16919 (13)
CHEBI:15756 (13)
CHEBI:17368 (13)
CHEBI:17568 (12)
CHEBI:7916 (12)
CHEBI:17596 (12)
CHEBI:30805 (11)
CHEBI:16467 (11)
CHEBI:17154 (11)
CHEBI:17351 (11)
CHEBI:17748 (10)
CHEBI:16566 (10)
CHEBI:28834 (10)
CHEBI:17405 (10)
CHEBI:17750 (10)
CHEBI:28842 (10)
CHEBI:18050 (10)
CHEBI:28661 (10)
CHEBI:15843 (10)
CHEBI:15318 (10)
CHEBI:32816 (10)
CHEBI:17203 (10)
CHEBI:16235 (10)
CHEBI:16737 (10)

Metabolite Name

Cytosine (10)
Hypoxanthine (10)
Uracil (9)
Uridine (9)
Taurine (8)
Citric acid (8)
L-Carnitine (8)
Choline (7)
L-Arginine (7)
Guanine (7)
Adenine (7)
Creatinine (7)
Creatine (7)
Inosine (7)
Betaine (6)
Sphingosine (6)
Pyroglutamic acid (6)
Indole (6)
Deoxycholic acid (6)
Cholic acid (6)
Niacinamide (6)
L-Proline (6)
Adenosine (6)
Palmitic acid (6)
L-Glutamine (6)
Dodecanoic acid (6)
Cytidine (6)
Thymidine (6)
AMP (5)
Valine (5)

First Public Date

2023 (2)

Modification

Not available (2)

Study type

Transcription profiling by array (58)
RNA-seq of coding RNA (18)
RNA-seq of coding RNA from single cells (8)
ChIP-seq (7)
Methylation profiling by high throughput sequencing (5)
ChIP-chip by tiling array (2)
Methylation profiling by array (2)
Cell line - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
Other (1)

Release Date

2025 (1840)
2022 (1511)
2023 (1288)
2024 (1280)
2021 (1175)
2020 (778)
2019 (553)
2018 (427)
2017 (362)
2016 (272)
2026 (248)
2015 (240)
2014 (176)
2013 (112)
2012 (97)
2011 (80)
2010 (59)
2009 (30)
2008 (22)
2007 (13)
2006 (5)
2005 (5)
2001 (3)
2004 (2)
2003 (1)
2002 (1)
2000 (1)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (6)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (4)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Institute of genetics and developmental biology (2)
Key Laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, China. (2)
Mayo Clinic, Department of Oncology (2)
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (2)
Sichuan University (2)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (2)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, Hubei,China (2)
State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, Fujian 361102, China (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
State Key Laboratory of Oncology in South China (2)
The First Affiliated Hospital of Fujian Medical University (2)
Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, China, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University (2)
Zhejiang University (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1. Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan 2. Institute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan (1)
1. Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA 2. UPMC Hillman Cancer Center, Pittsburgh, PA, USA 3. Department of Neurology, University of Pittsburgh, Pittsburgh, PA, USA 4. Department of Neurology, University of North Carolina, Chapel Hill, NC, USA (1)
1. Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA 2. UPMC Hillman Cancer Center, Pittsburgh, PA, USA 3. Department of Neurology, University of Pittsburgh, Pittsburgh, PA, USA 4. Department of Neurology, University of North Carolina, Chapel Hill, NC, USA (lab head) (1)
1. Ministry of Education Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Hangzhou, China 2. Cancer Center, Zhejiang University, Hangzhou, China (1)
198 shiqiao road, hangzhou, zhejiang province, P.R.China (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, Guangdong, China (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Anhui University of Traditional Chinese Medicine (1)
Army Medical University (Third Military Medical University) (1)

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Differential effects of Huang-Lian-Jie-Du Decoction on Alzheimer’s disease and normal rats

Introduction: Huang-Lian-Jie-Du Decoction (HLJDD), a botanical drug used in traditional medicine, has been used in the management of Alzheimer’s disease (AD). However, the mechanisms underlying its preventive effects remain inadequately understood, particularly due to the absence of metabolomic s...

2025-11-04 | MTBLS13256 | MetaboLights

Gene expression profiles of MCF-7 cells treated with Si-Wu-Tang, estradiol and ferulic acid

Traditional Chinese medicines (TCM), usually composed of a mixture of components, may simultaneously target multiple genes/pathways and thus achieve superior efficacy for complex diseases such as cancer. To identify novel mechanisms of action and potential health benefits for a TCM formula Si-Wu-Tan...

ORGANISM(S): Homo sapiens

2011-05-18 | E-GEOD-23610 | biostudies-arrayexpress

Drug response biomarkers of Pien Tze Huang treatment for hepatic fibrosis induced by carbon tetrachloride.

Not available

S-EPMC9924746 | biostudies-literature

Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04.

Not available

S-EPMC11003996 | biostudies-literature

Intermodule Coupling Analysis of Huang-Lian-Jie-Du Decoction on Stroke.

Not available

S-EPMC6848980 | biostudies-literature

Identification of circular RNA biomarkers for Pien Tze Huang treatment of CCl4‑induced liver fibrosis using RNA‑sequencing.

Not available

S-EPMC9437966 | biostudies-literature

Ma Huang Tang ameliorates bronchial asthma symptoms through the TLR9 pathway.

Not available

S-EPMC6237163 | biostudies-literature

Identification and chemical profiling of anti-alcoholic liver disease biomarkers of ginseng Huang jiu using UPLC-Q-Orbitrap-HRMS and network pharmacology-based analyses.

Not available

S-EPMC9412739 | biostudies-literature

Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21441)

Using data from microarray experiments, we investigated the effects of excess hydrogen peroxide on D. vulgaris. Keywords: stress response, time course Comparison of wild type and deletion mutant cells treated with 1 mM H2O2 to untreated cells at times of 0 and 120 min. See also Series GSE4447 (http...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2011-10-03 | E-GEOD-14345 | biostudies-arrayexpress

Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21438)

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2011-10-03 | E-GEOD-14355 | biostudies-arrayexpress

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