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Repository

biostudies-arrayexpress (233)
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Technology Type

Mass Spectrometry (93)
Shotgun proteomics (38)
Chemical cross-linking coupled with mass spectrometry proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (12)
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Gel-based experiment (10)
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ESI (2)
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SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (6)
Axon GenePix 4000B scanning hardware (5)
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Illumina HiSeq 4000 (4)
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Other (3)
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Unspecified (1)
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Liquid Chromatography MS - negative - reverse-phase (1)
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Liquid Chromatography MS - positive - hilic (1)
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Publication Date

2013 (39)
2010 (37)
2015 (30)
2026 (28)
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2002 (2)

CHEBI ID

CHEBI:15428 (4)
CHEBI:15756 (4)
CHEBI:15971 (4)
CHEBI:16359 (4)
CHEBI:16414 (4)
CHEBI:16525 (4)
CHEBI:16643 (4)
CHEBI:16704 (4)
CHEBI:16755 (4)
CHEBI:16797 (4)
CHEBI:16828 (4)
CHEBI:16857 (4)
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CHEBI:17895 (4)
CHEBI:18089 (4)
CHEBI:22470 (4)
CHEBI:28177 (4)
CHEBI:30769 (4)
CHEBI:30832 (4)
CHEBI:32816 (4)
CHEBI:36274 (4)
CHEBI:37998 (4)
CHEBI:40410 (4)
CHEBI:15354 (3)
CHEBI:15603 (3)

Metabolite Name

1-Methylnicotinamide (3)
Adenosine (3)
Betaine (3)
Hypoxanthine (3)
L-Carnitine (3)
L-Histidine (3)
L-Proline (3)
N1-Methyl-2-pyridone-5-carboxamide (3)
1-Aminocyclopropanecarboxylic acid (2)
2'-O-methylcytidine (2)
3-Methyl-2-oxovaleric acid (2)
3-Methylhistidine (2)
3-methylcytidine (2)
4-Guanidinobutyric acid (2)
6-Aminocaproic acid (2)
7-Methylguanine (2)
Caffeine (2)
Choline (2)
Creatinine (2)
Cytidine (2)
Cytosine (2)
D-Mannose (2)
DL-Phenylalanine (2)
Deoxycholic acid (2)
Hippuric acid (2)
Histamine (2)
L-Alanine (2)
L-Arginine (2)
L-Citrulline (2)
L-Glutamine (2)

First Public Date

2026 (23)
2025 (18)
2021 (15)
2019 (14)
2014 (13)
2020 (9)
2013 (9)
2024 (8)
2017 (7)
2023 (5)
2018 (5)
2015 (5)
2016 (3)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Laboratory of Molecular Parasitology, Institute of Parasitology, University of Zurich, Switzerland (3)
Department Biologie Professur für Mikrobiologie (2)
Greehey Children’s Cancer Research Institute, The University of Texas Health Science Center (2)
Novartis Institute of Biomedical Research, Cambridge, MA (2)
1 German Cancer Research Center (DKFZ), Heidelberg, Germany 2 Heidelberg University, Medical Faculty, Heidelberg, Germany (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom; ( lab head ) (1)
1Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Israel. (1)
3Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, The Netherlands. 4Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, The Netherlands. (1)
Amherst College (1)
Balgrist Campus Lengghalde 5 CH-8008 Zürich Switzerland (1)
Biological Mass Spectrometry and Proteomics Group, SMBP, PDC UMR 8249 CNRS, ESPCI Paris, Université PSL, 10 rue Vauquelin 75005, Paris, France (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
CECAD Research Center, University of Cologne, Cologne; Germany (1)
CRCHUM-Centre Hospitalier de l'Université de Montréal, Montréal, QC H2X 0A9, Canada. (1)
Centre for Medical Genetics, Institute of Reproductive Genetics, University of Münster, Vesaliusweg 12-14, 48149 Münster, Germany. (1)
Centre for Medical Genetics, Institute of Reproductive Genetics, University of Münster, Vesaliusweg 12-14, 48149, Münster, Germany. (1)
Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Crown Street, L697ZB, Liverpool, United Kingdom (1)
Chief, Liver Diseases Branch, NIDDK, NIH, DHHS, U.S. Government (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-Universität Bochum Universitätsstraße 150 44801 Bochum (1)
Department for Molecular and Applied Microbiology, Leibniz-Institute for Natural Product Research and Infection Biology, Hans Knöll Institute Jena, Germany (1)
Department of Biochemistry, University of Washington, Seattle, WA, USA (1)
Department of Biology and Biochemistry University of Bath Bath UK (1)
Department of Biology, Duke University, USA (1)
Department of Cardiology, University Medical Center Mainz, Germany (1)
Department of Chemical Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Roessle-Str. 10, 13125, Berlin, Germany (1)
Department of Chemistry and Sarafan ChEM-H (1)
Department of Dermatology, Stanford School of Medicine, Stanford University (1)
Department of Dermatology, University of Turku, Turku, Finland (1)
Department of Genome Sciences, University of Washington (1)

IsPrivate

False (1)

Classification

bacteria (2)

Modification

15.994915 (1)
4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
6-dioxaoctanediamine derivatized cysteine (1)
71.037114 (1)

Study type

Transcription profiling by array (93)
ChIP-seq (39)
ChIP-chip by array (38)
RNA-seq of coding RNA (25)
ChIP-chip by tiling array (10)
Other (5)
Unknown experiment type (4)
Methylation profiling by array (4)
Comparative genomic hybridization by array (3)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
RIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (115)
2021 (105)
2025 (92)
2023 (91)
2024 (89)
2020 (85)
2016 (79)
2019 (78)
2010 (77)
2015 (75)
2013 (66)
2018 (63)
2017 (57)
2014 (56)
2009 (50)
2012 (49)
2011 (40)
2008 (34)
2007 (25)
2026 (24)
2006 (24)
2005 (15)
2004 (11)
2002 (5)
2001 (3)
2000 (1)
1997 (1)

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Metabolite-phenotype link in X-linked Adrenoleukodystrophy (part II)

Not available

ORGANISM(S): Homo sapiens

ST000742 | MetabolomicsWorkbench

Metabolite-phenotype link in X-linked Adrenoleukodystrophy (fibroblast cell culture)

Not available

ORGANISM(S): Homo sapiens

ST000741 | MetabolomicsWorkbench

X-link of KIF3A/KIF3B/KAP3 complex with DSSO

X-link sites of KIF3A/KIF3B/KAP3 complex with DSSO

ORGANISM(S): Mus Musculus (mouse)

2022-08-16 | PXD027943 | JPOST Repository

X-link of KIF3A/KIF3B/KAP3/APC complex with DSSO

X-link sites of KIF3A/KIF3B/KAP3/APC complex with DSSO

ORGANISM(S): Mus Musculus (mouse)

2022-08-16 | PXD027942 | JPOST Repository

Tsix RNA and the germline factor, PRDM14, link X reactivation and stem cell reprogramming.

Not available

S-EPMC3950835 | biostudies-literature

Determining the impact of alternative splicing events on transcriptome dynamics

Background The complete sequencing of the human genome and its subsequent analysis revealed a predominant role for alternative splicing in the generation of proteome diversity. Splice switching oligonucleotides (SSOs) are a powerful and specific tool to experimentally control alternative splicing of...

ORGANISM(S): Homo sapiens

2008-10-02 | E-GEOD-9851 | biostudies-arrayexpress

A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation.

Not available

S-EPMC2989439 | biostudies-literature

Comprehensive Analysis of the Brain-Expressed X-Link Protein Family in Glioblastoma Multiforme.

Not available

S-EPMC9289282 | biostudies-literature

Deregulated expression of cytokine receptor gene, CRLF2, is involved in lymphoid transformation in BCP-ALL

Deregulated expression of cytokine receptor gene, CRLF2, is involved in lymphoid transformation in B-cell precursor acute lymphoblastic leukemia We report two novel, cryptic chromosomal abnormalities in precursor B-cell acute lymphoblastic leukemia (BCP-ALL): a translocation, either t(X;14)(p22;q32)...

ORGANISM(S): Homo sapiens

2010-05-16 | E-GEOD-17165 | biostudies-arrayexpress

Model of abasic site DNA cross-link repair; from the architecture of NEIL3 DNA binding domains to the X-structure model.

Not available

S-EPMC9561275 | biostudies-literature

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