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TranscriptomicsChromatin immunoprecipitation to identify CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis eggs
Identification of RNA bound to the RNA-binding protein CUGBP1/EDENBP in Xenopus tropicalis eggs.
ORGANISM(S): Xenopus tropicalis 
2008-02-21 | E-MEXP-1466 | biostudies-arrayexpress
GenomicsA Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos
Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryogenesis. Here, we report on the epigenetic and transcriptome genome-wide maps of gastrula-stage Xenopus tropicalis embryos using massive parallel seque...
ORGANISM(S): Xenopus (Silurana) tropicalis 
2009-09-15 | E-GEOD-14025 | biostudies-arrayexpress
TranscriptomicsDynamic liver transcriptome response of Xenopus tropicalis to benzo[a]pyrene
Chronological RNA-seq of comparison of liver from xenopus tropicalis exposed or not to benzo[a]pyrene (10ﾵg/L)
ORGANISM(S): Xenopus tropicalis 
2014-08-18 | E-MTAB-2444 | biostudies-arrayexpress
TranscriptomicsMapping gene expression in two Xenopus: evolutionary constraints and developmental flexibility
Variation in gene expression is known to be important for morphological evolution, however little is known about its general propensity. Here we examine a pair of frogs M-bM-^@M-^S Xenopus laevis and Xenopus tropicalis M-bM-^@M-^S with highly similar embryology, and ask how their transcriptomes comp...
ORGANISM(S): Xenopus laevis 
2011-06-01 | E-GEOD-27227 | biostudies-arrayexpress
MetabolomicsXenopus tropicalis regeneration timecourse
Not available
ORGANISM(S): Xenopus tropicalis 
ST002271 | MetabolomicsWorkbench
TranscriptomicsDeep sequencing of small RNAs in the Xenopus tropicalis gastrula
Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous siRNAs and piRNAs. In order to determine if small RNAs mapped to expressed Tc1-like elements are present during early Xenopus tropicalis development,...
ORGANISM(S): Xenopus (Silurana) tropicalis 
2011-06-18 | E-GEOD-30067 | biostudies-arrayexpress
TranscriptomicsInner ear expression data from pooled inner ear tissue from stages 56,57,58 Xenopus laevis larval inner ears
The inner ear continues to grow and develop until the auditory and vestibular systems reach full maturity and all of the genes involved in this process have yet to be identified. Previous gene based analysis have primarily focused on the early developmental stages following induction and initial for...
ORGANISM(S): Xenopus laevis 
2016-02-29 | E-GEOD-73829 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Xenopus laevis early embryos to investigate the roles of Nodal, Mixer and Sox17 in endoderm formation
A conserved molecular pathway has emerged controlling endoderm formation in Xenopus zebrafish and mice. Key genes in this pathway include Nodal ligands and transcription factors of the Mix-like paired homeodomain class, Gata4-6 zinc finger factors and Sox17 HMG domain proteins. While a linear epista...
ORGANISM(S): Xenopus laevis 
2007-10-05 | E-GEOD-4448 | biostudies-arrayexpress
GenomicsSystematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi
Various small RNA libraries from purified microtubules or Xiwi immunoprecipitates or total extract from X.tropicalis or X.laevis egg extract. Various small RNA libraries from single X.tropicalis eggs. Analysis of this series of files is described in the manuscript "Systematic and single cell ...
ORGANISM(S): Xenopus (Silurana) tropicalis 
2009-08-31 | E-GEOD-15556 | biostudies-arrayexpress
MetabolomicsXenopus tropicalis glycolysis and PPP inhibition
Not available
ORGANISM(S): Xenopus tropicalis 
ST002270 | MetabolomicsWorkbench
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