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TranscriptomicsChromatin immunoprecipitation to identify CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis eggs
Identification of RNA bound to the RNA-binding protein CUGBP1/EDENBP in Xenopus tropicalis eggs.
ORGANISM(S): Xenopus tropicalis 
2008-02-21 | E-MEXP-1466 | biostudies-arrayexpress
MetabolomicsXenopus tropicalis regeneration timecourse
Not available
ORGANISM(S): Xenopus tropicalis 
ST002271 | MetabolomicsWorkbench
TranscriptomicsDynamic liver transcriptome response of Xenopus tropicalis to benzo[a]pyrene
Chronological RNA-seq of comparison of liver from xenopus tropicalis exposed or not to benzo[a]pyrene (10ﾵg/L)
ORGANISM(S): Xenopus tropicalis 
2014-08-18 | E-MTAB-2444 | biostudies-arrayexpress
MetabolomicsXenopus tropicalis glycolysis and PPP inhibition
Not available
ORGANISM(S): Xenopus tropicalis 
ST002270 | MetabolomicsWorkbench
GenomicsA Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos
Epigenetic mechanisms set apart the active and inactive regions in the genome of multicellular organisms to produce distinct cell fates during embryogenesis. Here, we report on the epigenetic and transcriptome genome-wide maps of gastrula-stage Xenopus tropicalis embryos using massive parallel seque...
ORGANISM(S): Xenopus (Silurana) tropicalis 
2009-09-15 | E-GEOD-14025 | biostudies-arrayexpress
TranscriptomicsDeep sequencing of small RNAs in the Xenopus tropicalis gastrula
Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous siRNAs and piRNAs. In order to determine if small RNAs mapped to expressed Tc1-like elements are present during early Xenopus tropicalis development,...
ORGANISM(S): Xenopus (Silurana) tropicalis 
2011-06-18 | E-GEOD-30067 | biostudies-arrayexpress
TranscriptomicsHigh-throughput sequencing of small RNAs from Xenopus tropicalis
High-throughput sequencing of small RNAs from Xenopus tropicalis (adult liver, adult skin, oocytes stage I, II, III, IV, V, VI). total RNA, ~18-42 nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH Illumina/Solexa sequencing of adult liver, adult skin, oocytes stag...
ORGANISM(S): Xenopus (Silurana) tropicalis 
2009-07-09 | E-GEOD-14952 | biostudies-arrayexpress
TranscriptomicsRegional expression of X. tropicalis transcription factors in early gastrula embryos
Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes. Methods: Embryos were dissected and RNA-seq was performed to determine expression levels of genes. Comparisons between explanted regions permits determination of spatial en...
ORGANISM(S): Xenopus tropicalis 
2016-08-22 | E-GEOD-81458 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Xenopus tropicalis oocytes during maturation and early cleavage stages to identify post-transcriptionally regulated Xenopus tropicalis maternal mRNAs
Determine the adenylation state of maternal mRNAs during oocyte maturation and early cleavage stages of the xenopus tropicalis embryos
ORGANISM(S): Xenopus tropicalis 
2007-09-30 | E-MEXP-1236 | biostudies-arrayexpress
TranscriptomicsMapping gene expression in two Xenopus: evolutionary constraints and developmental flexibility
Variation in gene expression is known to be important for morphological evolution, however little is known about its general propensity. Here we examine a pair of frogs M-bM-^@M-^S Xenopus laevis and Xenopus tropicalis M-bM-^@M-^S with highly similar embryology, and ask how their transcriptomes comp...
ORGANISM(S): Xenopus laevis 
2011-06-01 | E-GEOD-27227 | biostudies-arrayexpress
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