Xia R R - OmicsDI

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Unknown (6371)
Transcriptomics (193)
Proteomics (141)
Metabolomics (128)
Genomics (25)
Models (5)
Other (1)

Organisms

Homo sapiens (146)
Mus musculus (103)
Gallus gallus (10)
Rattus norvegicus (7)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (6)
Canis lupus familiaris (6)
Arabidopsis thaliana (6)
Drosophila melanogaster (5)
Oryza sativa (5)
Saccharomyces cerevisiae (4)
Bos taurus (3)
Campylobacter jejuni (2)
Escherichia coli str. K-12 substr. MG1655 (2)
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Alphainfluenzavirus (1)
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Musa acuminata (1)
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Xenopus tropicalis (1)
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Mycobacterium tuberculosis (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)

Repository

biostudies-arrayexpress (208)
MetaboLights (128)
pride (104)
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Tissue

Cell culture (30)
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Disease

Disease free (4)
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Not Available (1)
Alzheimer's disease (1)
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COVID-19 (1)
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Diarrhea (1)
Diffuse gastric cancer (1)
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Glioblastoma (1)
Heart failure (1)
Herpes zoster (1)
Inflammatory bowel disease 1 (1)
Lung non-squamous non-small cell carcinoma (1)
Lung squamous cell carcinoma (1)
Neuropathic pain (1)
Onchocerciasis (1)
Pancreatic carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Parkinson's disease (1)
Prostate adenocarcinoma (1)
Saul-Wilson syndrome (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (104)
Mass spectrometry (100)
Shotgun proteomics (54)
Bottom-up proteomics (19)
NMR spectroscopy (17)
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Mass spectrometry assay (11)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (9)
SWATH MS (6)
Data-independent acquisition (3)
Top-down proteomics (3)
SRM/MRM (2)
NMR spectroscopy assay (1)
All-ion fragmentation (1)
Immunopeptidomics (1)
MSE (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (43)
Liquid Chromatography MS - negative - reverse phase (36)
Nuclear Magnetic Resonance (NMR) - (12)
Liquid Chromatography MS - positive - hilic (9)
Liquid Chromatography MS - alternating - hilic (8)
Liquid Chromatography MS - negative - hilic (7)
Direct infusion MS - negative (6)
Gas Chromatography MS - positive (6)
Liquid Chromatography MS - alternating - reverse phase (6)
Direct infusion MS - positive (5)
Bruker (4)
Flow injection analysis MS - negative (4)
Liquid Chromatography MS - alternating - reverse-phase (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - positive (4)
Gas Chromatography MS - Positive (GC-MS (Positive)) (3)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
Illumina HiSeq 2500 (2)
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QIAseqTM miRNA Library Kit (1)
ExoEasy Maxi Kit. (1)
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Agilent G2565AA and G2565BA Microarray Scanner (1)
G2565BA DNA microarray scanner [Agilent] (1)
Ion Torrent PGM (1)
Illumina MiSeq (1)
Illumina HiSeq 2000 (1)
Instrument (1)
Orbitrap Eclipse (1)

Publication Date

2022 (59)
2013 (59)
2023 (41)
2024 (36)
2021 (35)
2025 (33)
2014 (32)
2012 (30)
2015 (25)
2026 (21)
2010 (19)
2016 (17)
2011 (12)
2008 (12)
2020 (11)
2019 (10)
2009 (9)
2018 (8)
2017 (7)
2006 (3)
2007 (1)
2005 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)
A0PJX4 (1)
A1L0T0 (1)
A1L390 (1)
A2A3K4 (1)
A2BFH1 (1)
A2NUT2 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:28044 (40)
CHEBI:30769 (37)
CHEBI:15428 (34)
CHEBI:18237 (33)
CHEBI:15354 (32)
CHEBI:16704 (32)
CHEBI:18186 (32)
CHEBI:16335 (29)
CHEBI:16708 (29)
CHEBI:16919 (29)
CHEBI:17368 (29)
CHEBI:18012 (29)
CHEBI:16737 (28)
CHEBI:17596 (28)
CHEBI:17895 (28)
CHEBI:15741 (27)
CHEBI:24898 (27)
CHEBI:27897 (27)
CHEBI:6650 (27)
CHEBI:7916 (27)
CHEBI:15756 (26)
CHEBI:17295 (26)
CHEBI:17822 (26)
CHEBI:22660 (26)
CHEBI:26271 (26)
CHEBI:28300 (26)
CHEBI:32816 (26)
CHEBI:15603 (25)
CHEBI:16811 (25)
CHEBI:50183 (1)

Metabolite Name

Uridine (26)
Glycine (25)
Choline (24)
Creatinine (24)
Adenosine (23)
Creatine (22)
Xanthine (22)
Adenine (21)
Inosine (21)
Phenylalanine (21)
Taurine (20)
Citric acid (19)
Hypoxanthine (19)
L-Leucine (19)
L-Tyrosine (19)
Proline (19)
Tyrosine (19)
D-Glucose (18)
L-Glutamine (18)
L-Proline (18)
Tryptophan (18)
Cytidine (17)
Isoleucine (17)
Ornithine (17)
Valine (17)
Arachidonic acid (16)
Betaine (16)
Glutathione (16)
Histidine (16)
L-Arginine (16)

First Public Date

2020 (1)

Modelling Approach

Computational model (4)
Ordinary differential equation model (1)

Lab affiliation

Central South University (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
Institute of Integrative Biology, University of Liverpool (2)
National Institutes of Health (NIH) National Center for Advancing Translational Sciences (NCATS) (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
Seer Inc. (2)
Zhejiang University (2)
1Seer, Inc., Redwood City, CA 94065, USA; 4Center for Nanomedicine and Department of Anesthesiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Associate Director of Analytical Services, Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA (1)
Beijing Hospital (1)
Bio-tech Research Center, Shandong Academy of Agricultural Sciences, Jinan, China. (1)
Bio-tech Research Center, Shandong Academy of Agricultural Sciences, Jinan,China. (1)
Bio-tech Research center, Shandong Academy of Agricultural Science, Jinan, China. (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Ole Maaløes Vej 5, 2200 Copenhagen, Denmark (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, MA 02118 (1)
Center for Infectious Diseases Research Department of Pathology and Genomic Medicine Houston Methodist Research Institute USA (1)
Centre de Recherche en Cancérologie de Marseille, CRCM INSERM U1068 - Equipe de J.L. Iovanna 163 avenue de Luminy, Parc scientifique de Luminy, Case 915 13288 Marseille Cedex 9 FRANCE Tel : (+33) 4 91 82 88 31 (1)
Chalmers University of Technology (1)
Changhai Hospital, Naval Medical University, Shanghai, 200433, China. (1)
China Agricultural University (1)
China Medical University School of Forensic Medicine (1)
China agricultural university (1)
College of Agriculture and Biotechnology, Zhejiang University (1)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (1)
College of Marine Life Sciences, Ocean University of China, Qingdao, China (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (1)
Department of Biochemistry and Molecular Biology Department of Urology, Mayo clinic, Rochester MN, US (1)
Department of Biology and Technology, Kunming University, Kunming, China (1)

IsPrivate

False (5)

Submitter Keywords

Ersilia (4)
Machine Learning Model (4)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (144)
RNA-seq of coding RNA (32)
ChIP-seq (7)
RNA-seq of non coding RNA (7)
Methylation profiling by high throughput sequencing (6)
Comparative genomic hybridization by array (2)
DNA-seq (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (924)
2022 (861)
2024 (761)
2023 (761)
2021 (687)
2020 (509)
2019 (352)
2018 (291)
2016 (237)
2017 (233)
2015 (217)
2026 (163)
2014 (153)
2013 (126)
2012 (89)
2010 (58)
2011 (51)
2009 (34)
2008 (29)
2006 (15)
2007 (11)
2004 (6)
2005 (5)
2003 (3)
1999 (2)
2002 (1)

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The Proteome of the Infectious Bronchitis Virus Beau-R Virion

Infectious bronchitis is a highly contagious respiratory disease of poultry caused by the coronavius infectious bronchitis virus (IBV). Until recently is was thought that coronavirus virions were composed of the structural proteins nucleocapsid, envelope, spike and membrane proteins, but investigat...

ORGANISM(S): Avian infectious bronchitis virus (strain Beaudette CK) (IBV)

2016-02-15 | PXD002936 | Pride

Beau-r virion Infectious bronchitis virus

human leukemia cell line K562 offspring acquring imatinib resistance(K562-r) : Control vs. Drug treated

Transcriptional profiling of K562-r comparing control untreated human leukemia cells with human leukemia cells treated with AMN107 and ATO individually or combined.Four timepoints included are 3h,12h,24h,48h, covering the whole time window of K562-r cells responsing to the drug treatment.At the comb...

ORGANISM(S): Homo sapiens

2010-12-30 | E-GEOD-24946 | biostudies-arrayexpress

Factor XIa Inhibitors as a Novel Anticoagulation Target: Recent Clinical Research Advances.

Not available

S-EPMC10300994 | biostudies-literature

Ectoplasm, ghost in the R cell machine?

Not available

S-EPMC3202658 | biostudies-literature

Annexin A1 translocates to nucleus and promotes the expression of pro-inflammatory cytokines in a PKC-dependent manner after OGD/R.

Not available

S-EPMC4947919 | biostudies-literature

R-loops coordinate with SOX2 in regulating reprogramming to pluripotency.