Xiao J J - OmicsDI

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Unknown (19028)
Proteomics (538)
Transcriptomics (155)
Metabolomics (47)
Genomics (33)
Models (5)
Genomic (1)
Other (1)

Organisms

Homo sapiens (238)
Mus musculus (100)
Rattus norvegicus (9)
Escherichia coli (8)
Arabidopsis thaliana (6)
Drosophila melanogaster (5)
Severe acute respiratory syndrome coronavirus 2 (3)
Sus scrofa (3)
Oryza sativa (3)
Rattus rattus (3)
Streptococcus suis (2)
Triticum aestivum (2)
Saccharomyces cerevisiae (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Escherichia coli K-12 (1)
Pteropus alecto (1)
Brassica oleracea (1)
Paralichthys olivaceus (1)
Solanum pimpinellifolium (1)
Capra hircus (1)
Streptococcus mutans (1)
Bemisia tabaci (1)
Zea mays subsp. mays (1)
Macaca mulatta (1)
synthetic construct (1)
Oryza sativa Indica Group (1)
Zea mays (1)
Oryza sativa Japonica Group (1)
Gallus gallus (1)
Acropora muricata (1)

Organisms

Ureaplasma urealyticum 4318 (1)
Ureaplasma urealyticum 2608 (1)
Ureaplasma urealyticum 4155 (1)
Ureaplasma urealyticum 2033 (1)
Mus musculus (1)

Repository

pride (268)
iProX (236)
biostudies-arrayexpress (168)
MetaboLights (44)
PAXDB (18)
EGA (16)
MassIVE (13)
BioModels (5)
ENA (5)
GNPS (3)
dbGaP (1)
geo (1)
GPMDB (1)
jPOST (1)
PeptideAtlas (1)

Tissue

Cell culture (53)
Brain (25)
Liver (19)
Epithelial cell (15)
Blood serum (12)
Lung (11)
Heart (10)
Hepatocyte (10)
Kidney (10)
Permanent cell line cell (10)
Spleen (10)
Blood plasma (9)
Plant cell (8)
Testis (8)
B cell (7)
Leaf (7)
Skin (7)
Bone marrow (6)
Stem cell (5)
Cell suspension culture (4)
Pupal wing (4)
Skeletal muscle (4)
Whole body (4)
Blood cell (3)
Brown adipose tissue (3)
Early embryonic cell (3)
HEK-293T cell (3)
JURKAT cell (3)
Keratinocyte (3)
Plasma Non-glyco (1)

Disease

Disease free (11)
Acute leukemia (8)
Colon cancer (6)
Cardiovascular system disease (5)
Wounds and Injuries (5)
Breast cancer (3)
COVID-19 (2)
Autism spectrum disorder (2)
Cervix carcinoma (2)
Lymphoma (2)
Neuroblastoma (2)
Prostate adenocarcinoma (2)
Burn/trauma (1)
Small interference (1)
Normal (1)
Not Available (1)
Alzheimer's disease (1)
Ankylosing spondylitis (1)
Bacterial infectious disease (1)
Bacterial sepsis (1)
Bone osteosarcoma (1)
Brain cancer (1)
Brain ischemia (1)
Burkitt lymphoma (1)
Cholangiocarcinoma (1)
Chromophobe renal cell carcinoma (1)
Chronic fatigue syndrome (1)
Connective tissue disease (1)
Enteritis (1)
Glycogen storage disease (1)

Technology Type

Mass Spectrometry (268)
Shotgun proteomics (119)
Bottom-up proteomics (49)
Mass spectrometry (38)
Data-dependent acquisition (36)
Affinity purification coupled with mass spectrometry proteomics (34)
Gel-based experiment (16)
Data-independent acquisition (14)
Top-down proteomics (11)
SWATH MS (8)
NMR spectroscopy (4)
Proteogenomics (4)
SRM/MRM (3)
Mass spectrometry assay (2)
Affinity proteomics (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Immunopeptidomics (2)
Illumina OncoArray (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
DiaPASEF (1)
Glycoproteomics (1)
HDMSE (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (19)
Liquid Chromatography MS - negative - reverse phase (18)
Illumina NovaSeq 6000 (3)
Orbitrap Fusion Lumos (3)
Q Exactive (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Q Exactive HF (2)
TripleTOF 6600 (2)
Orbitrap Eclipse (2)
Orbitrap Fusion (2)
Bruker (2)
UPLC Q-TOF Premier (Waters) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Xevo G2 QTOF (Waters) (2)
Chromium Controller / Agilent Bioanalyzer (1)
Chromium Controller (1)
Agilent High resolution C scanner (1)
Maxwell 16 Instrument (1)
None (1)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive Plus (1)

Publication Date

2022 (92)
2023 (85)
2024 (82)
2021 (82)
2025 (75)
2020 (66)
2026 (49)
2019 (27)
2014 (26)
2013 (24)
2015 (22)
2012 (22)
2010 (22)
2017 (15)
2008 (14)
2016 (13)
2018 (12)
2011 (11)
2007 (9)
2009 (4)
2006 (2)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
2A5D_HUMAN (17)
2A5E_HUMAN (17)
2A5G_HUMAN (17)
2AAA_HUMAN (17)
2ABA_HUMAN (17)
O80536 (1)
Q8L5W8 (1)
Q84LH8 (1)
Q8W2F3 (1)
Q9SNB4 (1)
O04211 (1)
Q6LA42 (1)
P07659 (1)
P00573 (1)
Q6R0H1 (1)
P92973 (1)
P42212 (1)
Q93WK5 (1)
Q8L500 (1)
P0A6P1 (1)
P0CE47 (1)
Q9LKL2 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:30769 (13)
CHEBI:16704 (12)
CHEBI:17750 (11)
CHEBI:15756 (11)
CHEBI:17154 (10)
CHEBI:28044 (10)
CHEBI:16708 (10)
CHEBI:17568 (10)
CHEBI:27897 (10)
CHEBI:15428 (9)
CHEBI:16335 (9)
CHEBI:16196 (9)
CHEBI:16919 (9)
CHEBI:17596 (9)
CHEBI:17351 (9)
CHEBI:17368 (9)
CHEBI:16467 (8)
CHEBI:15891 (8)
CHEBI:17748 (8)
CHEBI:25094 (8)
CHEBI:30915 (8)
CHEBI:55328 (8)
CHEBI:28875 (8)
CHEBI:17895 (8)
CHEBI:16610 (7)
CHEBI:28834 (7)
CHEBI:46195 (1)
CHEBI:33697 (1)
CHEBI:17535 (1)
CHEBI:33699 (1)

Metabolite Name

Citric acid (9)
Uridine (9)
Hypoxanthine (9)
Adenosine (8)
Adenine (8)
Palmitic acid (8)
Guanosine (8)
Inosine (8)
L-Arginine (7)
Deoxycholic acid (7)
Azelaic acid (7)
L-Glutamine (7)
Oleic acid (7)
Linoleic acid (7)
Uric acid (7)
Creatine (7)
L-Tyrosine (7)
Spermine (6)
Spermidine (6)
Pantothenic acid (6)
Taurine (6)
Ascorbic acid (6)
Cholic acid (6)
Dibutyl phthalate (6)
Tetradecanedioic acid (6)
Riboflavin (6)
Dodecanedioic acid (6)
Uracil (6)
Butylparaben (6)
Cytidine (6)

First Public Date

2013 (4)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)
Steady-state model (1)
Population model (1)
Physiologically based pharmacokinetic model (1)

Lab affiliation

Center of Molecular and Cellular Oncology, Yale University (4)
Department of Molecular Biology and Endocrinology, “VINČA”, Institute of Nuclear Sciences - National Institute of thе Republic of Serbia, University of Belgrade, Belgrade, Serbia (4)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (4)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (3)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
The University of Melbourne (3)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
College of Life Sciences, Hunan Normal University (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Clinical Laboratory Medicine, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (2)
Department of Fisheries, College of Animal Science and Technology, Hunan agriculture university (2)
Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA. (2)
Guangdong Pharmaceutical University (2)
Immunology Research Center, National Health Research Institutes, Zhunan, Taiwan. (2)
Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, 210042 Nanjing, China. (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences (2)
Mayo Clinic, Department of Oncology (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Nanjing Agricultural University (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (2)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)

IsPrivate

False (5)

Submitter Keywords

COVID-19 (1)

Classification

bacteria (4)

Modification

57.021464 (1)

Study type

Transcription profiling by array (99)
RNA-seq of coding RNA (36)
ChIP-seq (10)
Comparative genomic hybridization by array (4)
Other (4)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)

Release Date

2025 (2952)
2022 (2695)
2023 (2455)
2024 (2287)
2021 (1933)
2020 (1436)
2019 (1018)
2018 (860)
2017 (737)
2016 (624)
2015 (476)
2026 (411)
2014 (377)
2013 (244)
2012 (194)
2011 (143)
2010 (112)
2009 (74)
2008 (62)
2007 (39)
2005 (16)
2006 (15)
2004 (13)
2003 (7)
2000 (5)
2001 (3)
1999 (3)
2002 (2)
1998 (1)

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Inverse J-Shaped Relationship of Dietary Carbohydrate Intake with Serum Klotho in NHANES 2007-2016.

Not available

S-EPMC10537068 | biostudies-literature

CD5L associates with IgM via the J chain.

Not available

S-EPMC11437284 | biostudies-literature

Inhibition of avian leukosis virus subgroup J replication by miRNA targeted against env.

Not available

S-EPMC7089131 | biostudies-literature

Utilizing Polymer Micelle to Control Dye J-aggregation and Enhance Its Theranostic Capability.

Not available

S-EPMC6906732 | biostudies-literature

Loss of RNase J leads to multi-drug tolerance and accumulation of highly structured mRNA fragments in Mycobacterium tuberculosis.

Not available

S-EPMC9312406 | biostudies-literature

The RAG1 N-terminal region regulates the efficiency and pathways of synapsis for V(D)J recombination.

Not available

S-EPMC8374863 | biostudies-literature

Expression analysis of fully-grown oocyte collected from mouse wild-type, Hsf1 mutant or Hsf2 mutant

Investigation of whole genome gene expression level changes in oocytes Hsf1-/- or Hsf2-/- compared to wild-type. The mutants analyzed in this study are further described in McMillan DR, Xiao X, Shao L, Graves K, Benjamin IJ. 1998. Targeted disruption of heat shock transcription factor 1 abolishes th...

ORGANISM(S): Mus musculus

2011-06-30 | GSE26240 | GEO

A J-shaped association between weight-adjusted waist index and cardiovascular disease: a longitudinal study from the CHARLS database.

Not available

S-EPMC12628520 | biostudies-literature

Targeting miR-30d reverses pathological cardiac hypertrophy.

Not available

S-EPMC9240797 | biostudies-literature

Ureaplasma urealyticum 4318

Ureaplasma urealyticum 4318 Genome sequencing and assembly

PRJNA89461 | ENA

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19809 Results

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Organisms

Organisms

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Disease

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ENSEMBL ID

CHEBI ID

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