Xiao Lihong L - OmicsDI

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Transcriptomics (2)
Metabolomics (1)

Repository

biostudies-arrayexpress (2)
MetaboLights (1)

Technology Type

Mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (1)
2011 (1)
2024 (1)

CHEBI ID

CHEBI:10023 (1)
CHEBI:10028 (1)
CHEBI:10029 (1)
CHEBI:10037 (1)
CHEBI:10089 (1)
CHEBI:10095 (1)
CHEBI:10106 (1)
CHEBI:10112 (1)
CHEBI:10117 (1)
CHEBI:10119 (1)
CHEBI:10121 (1)
CHEBI:10135 (1)
CHEBI:10137 (1)
CHEBI:1014 (1)
CHEBI:10214 (1)
CHEBI:102216 (1)
CHEBI:102484 (1)
CHEBI:102524 (1)
CHEBI:10276 (1)
CHEBI:10319 (1)
CHEBI:111173 (1)
CHEBI:113 (1)
CHEBI:113543 (1)
CHEBI:116915 (1)
CHEBI:1191 (1)
CHEBI:125201 (1)
CHEBI:125451 (1)
CHEBI:125472 (1)
CHEBI:1263 (1)
CHEBI:131168 (1)

Metabolite Name

(+)-10-deoxymethynolide (1)
(+)-castanospermine (1)
(+)-syringaresinol (1)
(+/-)-abscisic acid (1)
(+/-)-camphor (1)
(+/-)-camphoric acid (1)
(+/-)12(13)-dihome (1)
(+/-)19(20)-dihdpa (1)
(+/-)8(9)-dihet ((8R,9R)-DHET) (1)
(+/-)9(10)-epome (1)
(+/-)9,10-dihydroxy-12z-octadecenoic acid (1)
(+/-)9-hpode (1)
(-)-andrographolide (1)
(10s)-juvenile hormone iii diol (1)
(11s,12e,14z)-11-hydroxy-12,14-icosadienoic acid (1)
(14r)-3beta,5,6beta,10,16-pentahydroxygrayanotoxan-14-yl acetate (1)
(17beta)-4-(acetylsulfanyl)-3-oxoandrost-4-en-17-yl propionate (1)
(1r,2r,6s,7s,8r,10s,11s,12r,16r,18r)-6,7-dihydroxy-8-(hydroxymethyl)-16-isopropenyl-4,18-dimethyl-14-nonyl-9,13,15,19-tetraoxahexacyclo[12.4.1.0~1,11~.0~2,6~.0~8,10~.0~12,16~]nonadec-3-en-5-one (1)
(1s,3z)-4-methylene-3-[(2e)-2-{(1r,3as,7ar)-7a-methyl-1-[(2r)-7,7,7-trifluoro-6-hydroxy-2-heptanyl]octahydro-4h-inden-4-ylidene}ethylidene]cyclohexanol (1)
(20z)-17-oxo-20-hexacosenoic acid (1)
(25s)-5beta-spirostan-3beta-yl beta-d-glucoside (1)
(2e)-3-[4-(sulfooxy)phenyl]acrylic acid (1)
(2e)-4-{3-[2-(2,4-dihydroxyphenyl)-2-oxoethyl]-4,6-dihydroxy-2-methoxyphenyl}-2-methyl-2-buten-1-yl hydrogen sulfate (1)
(2r)-2,3-dihydroxypropanoic acid (1)
(2r)-2-beta-gdimboa (1)
(2r)-3-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(octanoyloxy)propyl octanoate (1)
(3a,5b,7a,12a)-24-[(carboxymethyl)amino]-1,12-dihydroxy-24-oxocholan-3-yl-b-d-glucopyranosiduronic acid (1)
(3alpha,5beta,7alpha,12alpha,23e)-3,7,12-trihydroxyergost-23-en-26-oic acid (1)
(3alpha,5beta,7alpha,8xi,9xi,12alpha,14xi,25r)-7-(beta-d-galactopyranosyloxy)-3,12-dihydroxycholestan-27-yl acetate (1)
(5-benzyl-3,6-dioxo-2-piperazinyl)acetic acid (1)

Study type

RNA-seq of coding RNA (2)

Release Date

2015 (1)
2011 (1)

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Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens

Gene expression was analyzed with digital gene expression tag profiling (DGEP) with samples taken from P. patens protonema at 3, 14 and 24 days, and also from or leafy shoot tissues l at 30 days after protoplastes isolated, and from 14-day-old caulonemal and chloronemal tissues. Totally, 4333 genes ...

ORGANISM(S): Physcomitrella patens

2011-12-20 | E-GEOD-33279 | biostudies-arrayexpress

Transcriptomic and metabolomic analysis of liver cirrhosis

Liver cirrhosis is one of the leading causes of decreased life expectancy worldwide. However, the molecular mechanisms underlying the development of liver cirrhosis remain unclear. In this study, we performed a comprehensive analysis using transcriptome and metabolome sequencing to explore the genes...

2024-08-07 | MTBLS5665 | MetaboLights

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens

We obtained genome-wide digital gene expression tag profiles within the first three days of P. patens protoplast reprogramming. At four time-points during protoplast reprogramming, the transcript levels of 4827 genes changed more than four-fold and their expression correlated with the reprogramming ...