Xie Can C - OmicsDI

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Unknown (3903)
Proteomics (102)
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Models (2)

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Homo sapiens (118)
Mus musculus (33)
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Organisms

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bioreactor sludge metagenome (1)

Repository

biostudies-arrayexpress (67)
pride (55)
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Cell culture (16)
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Disease

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Technology Type

Mass Spectrometry (55)
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2005 (1)
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2007 (1)

UNIPROT ID/AC

2A5D_YEAST (1)
2AAA_YEAST (1)
3HAO_YEAST (1)
4932.YDL191W (1)
4932.YDR025W (1)
4932.YEL054C (1)
4932.YER102W (1)
4932.YER117W (1)
4932.YER137C-A (1)
4932.YER159C-A (1)
4932.YGR161C-C (1)
4932.YGR161W-A (1)
4932.YGR161W-B (1)
4932.YIL018W (1)
4932.YIL069C (1)
4932.YJR145C (1)
4932.YKR059W (1)
4932.YKR094C (1)
4932.YLR035C-A (1)
4932.YLR157C-A (1)
4932.YLR227W-A (1)
4932.YML026C (1)
4932.YML040W (1)
4932.YMR051C (1)
4932.YOL120C (1)
4932.YOR133W (1)
4932.YOR182C (1)
4932.YOR312C (1)
4932.YPL220W (1)
4932.YPL257W-A (1)

CHEBI ID

CHEBI:30769 (13)
CHEBI:15756 (9)
CHEBI:16704 (9)
CHEBI:16750 (9)
CHEBI:17568 (9)
CHEBI:17895 (9)
CHEBI:48131 (9)
CHEBI:16467 (8)
CHEBI:16708 (8)
CHEBI:16857 (8)
CHEBI:17154 (8)
CHEBI:17295 (8)
CHEBI:17562 (8)
CHEBI:17859 (8)
CHEBI:18089 (8)
CHEBI:28997 (8)
CHEBI:30805 (8)
CHEBI:55328 (8)
CHEBI:7916 (8)
CHEBI:9300 (8)
CHEBI:15741 (7)
CHEBI:15891 (7)
CHEBI:15940 (7)
CHEBI:16015 (7)
CHEBI:16359 (7)
CHEBI:16411 (7)
CHEBI:16414 (7)
CHEBI:16828 (7)
CHEBI:17191 (7)
CHEBI:17203 (7)

Metabolite Name

Citric acid (9)
Guanosine (9)
Uridine (9)
Azelaic acid (7)
Cytidine (7)
Palmitic acid (7)
Suberic acid (7)
Taurine (7)
Adenine (6)
Arachidonic acid (6)
Cholic acid (6)
Fumaric acid (6)
Hippuric acid (6)
Inosine (6)
L-Phenylalanine (6)
L-Tryptophan (6)
L-Valine (6)
Uracil (6)
Allantoin (5)
Citrulline (5)
D-Glucuronic acid (5)
D-Ribose (5)
Deoxycytidine (5)
Glutaric acid (5)
Glyceric acid (5)
Guanine (5)
Hypoxanthine (5)
L-Arginine (5)
L-Glutamine (5)
L-Proline (5)

First Public Date

2020 (1)
2018 (1)
2014 (1)

Modelling Approach

Machine learning (1)

Lab affiliation

Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Center for Genomics Department of Basic Sciences Loma Linda University School of Medicine (1)
Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, China (1)
Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang 310052, China (1)
China Agricultural University (1)
China State Institute of Pharmaceutical Industry (1)
Chongqing University (1)
College of Life Sciences, South-Central University for Nationalities (1)
Department of Biochemistry and Biophysics University of North Carolina Chapel Hill, NC USA (1)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (1)
Department of Biosciences & Medical Biology, Paris Lodron University of Salzburg, Austria. (1)
Department of Chemistry and Biochemistry, Brigham Young University (1)
Department of Chemistry and Biochemistry, Brigham Young University (lab head) (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, 84602 (1)
Department of Chemistry and Biochemistry, Brigham Young University. (1)
Department of Neurosurgery, Suzhou Kowloon Hospital, Shanghai Jiaotong University School of Medicine, 118 Wanshen Street, Suzhou, China. (1)
FDA (1)
Faculty of Pharmacy, Hubei University of Chinese Medicine (1)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Institute of Biophysics, Chinese Academy of Sciences (1)
Jiangsu Academy of Agricultural Sciences (1)
Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Adolf-Reichwein-Str. 23, 07745, Jena, Germany (1)
MOE Key Laboratory of Gene Function and Regulation, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, 510275, Guangzhou, Guangdong, China. (1)
Marian A. Messerschmidt Professor of Oncology Associate Director, McArdle Laboratory for Cancer Research,UW Madison (1)
Massachusetts Institute of Technology, Department of Biological Engineering, David H Koch Institute for Integrative Cancer Research (1)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Dongdan Santiao 5 #, Dongcheng district, Beijing 100005, China. (1)
Nephrology Department of Guilin No.924 Hospital, Guangxi Key Laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research; Clinical Medical Research Center, The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital) (1)
Ph.D. and Professor Department of Chemistry and Center for Diagnostics & Therapeutics (CDT) Georgia State University (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (11)
ChIP-seq (7)
Methylation profiling by high throughput sequencing (5)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (4)
Genotyping by array (2)
Animal - High-throughput sequencing (1)
Other (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2022 (613)
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2019 (194)
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2016 (117)
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2014 (81)
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2011 (31)
2012 (30)
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2010 (13)
2008 (11)
2007 (7)
2006 (3)
2005 (2)
2000 (2)
2004 (1)
2003 (1)
2002 (1)
1997 (1)

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Serum organic acid metabolites can be used as potential biomarkers to identify prostatitis, benign prostatic hyperplasia, and prostate cancer (Untargeted assay)

BACKGROUND: Noninvasive methods for the early identify diagnosis of prostatitis, benign prostatic hyperplasia (BPH), and prostate cancer (PCa) are current clinical challenges.

METHODS: The serum metabolites of 20 healthy individuals and patients with prosta...

2023-04-17 | MTBLS6039 | MetaboLights

Serum organic acid metabolites can be used as potential biomarkers to identify prostatitis, benign prostatic hyperplasia, and prostate cancer (Targeted organic acid assay)

BACKGROUND: Noninvasive methods for the early identify diagnosis of prostatitis, benign prostatic hyperplasia (BPH) and prostate cancer (PCa) are current clinical challenges.

METHODS: The serum metabolites of 20 healthy individuals and patients with prostat...

2023-04-17 | MTBLS6038 | MetaboLights

Differential gene expression profiling of MIHA cells transfected with C-terminal truncated HBx mutants

To compare the differentially expressed transcriptomes between MIHA cells transfected with empty vector control or different C-terminal truncated HBx mutants (14 or 35 amino acid carboxyl-terminal truncation - i.e. d14 and d35) mRNA profiles of MIHA cells stably overexpressing empty vector control o...

ORGANISM(S): Homo sapiens

2016-08-02 | E-GEOD-71993 | biostudies-arrayexpress

Global Reorganization of Chromatin Architecture during Embronic Stem Cell Differentiation

The 3D organization of the genome is important for regulation of diverse nuclear processes ranging from transcription to DNA replication. Knowledge of the higher order chromatin structure is critical for understanding mechanisms of gene regulation by long-range control elements such as enhancers and...

ORGANISM(S): Homo sapiens

2015-02-18 | E-GEOD-52457 | biostudies-arrayexpress

Late-stage trifluoromethylthiolation of benzylic C-H bonds.

Not available

S-EPMC6814834 | biostudies-literature

Identification of Molecular Subtypes and Prognostic Characteristics of Adrenocortical Carcinoma Based on Unsupervised Clustering.

Not available

S-EPMC10607826 | biostudies-literature

Shu-Xie decoction alleviates oxidative stress and colon injury in acute sleep-deprived mice by suppressing p62/KEAP1/NRF2/HO1/NQO1 signaling.

Not available

S-EPMC9939528 | biostudies-literature

Photoinduced copper-catalyzed C-N coupling with trifluoromethylated arenes.