Xie Ran R - OmicsDI

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Unknown (73)
Proteomics (6)
Genomics (2)
Transcriptomics (1)
Metabolomics (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (3)
Andropogon gerardi (3)
Bacteria (3)
Bartonella quintana JK 31 (3)
Canis lupus familiaris (3)
Cnidaria (3)
Ectopseudomonas oleovorans CECT 5344 (3)
Ensifer adhaerens (3)
Halictus scabiosae (3)
Human immunodeficiency virus 1 (3)
Mesocricetus auratus (3)
Miscanthus x giganteus (3)
Morchella importuna (3)
Mus musculus (3)
Panicum virgatum (3)
Pseudomonas aeruginosa PA103 (3)
Pseudomonas aeruginosa SJTD-1 (3)
Rabies virus Nishigahara RCEH (3)
Rattus norvegicus (3)
Rattus rattus (3)
Rhodococcus jostii RHA1 (3)
Rhodopseudomonas palustris (3)
Shigella (3)
Sorghastrum nutans (3)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (3)
Streptococcus pneumoniae (3)
Mus musculus (2)
Homo sapiens (2)
Gasterosteus aculeatus (1)
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (1)

Repository

iProX (3)
pride (3)
biostudies-arrayexpress (2)
EGA (1)
MetaboLights (1)

Tissue

Cell culture (1)
HeLa cell (1)
Nucleus pulposus (1)
Nucleus pulposus cell of intervertebral disc (1)

Disease

Degenerative disc disease (1)

Technology Type

Mass Spectrometry (3)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (2)
2026 (2)
2011 (1)
2009 (1)
2022 (1)
2021 (1)
2023 (1)

Metabolite Name

3-Methylthiopropyl-Desulfoglucosinolate (1)
3-(2-Propenoic Acid)-O-Benzoquinone (1)
Succinyldisalicylic Acid (1)
(Imidazolylbiphenylyl)Sulfonylurea (1)
Benzotript (1)
Sulfobutyl Ether (1)
5-(3',5'-Dihydroxyphenyl)-Gamma-Valerolactone-O-Sulphate-O-Methyl (1)
Thiodi-Glycolic Acid (1)
2-Hydroxy-4-Methylthiobutyric Acid (1)
3-[4-Hydroxy-3-[3-(4-Hydroxyphenyl)Prop-2-Enoyloxy]Phenyl]Prop-2-Enoic Acid (1)
2,3,4,5-Tetrachloro-4'-Biphenylol (1)
3',6'-Dihydroxy-4,5-Diaminospiro[Isobenzofuran-1(3H),9'-[9H]Xanthene]-3-One (1)
Pyrrolostatin (1)
Patuletin 7-Glucoside (1)
4-Nitrophenyl Beta-D-Glucopyranosiduronic Acid (1)
Isopropyl Beta-D-Glucoside (1)
L-Proline, 1-Acetyl-4-Hydroxy-, Cis- (1)
4,7-Dihydro-5-(4-Methyl-3-Pentenyl)-1,2,3-Trithiepin (1)
Carboxy-Ethyl-Hydroxychroman (1)
N-Acetyl-Dl-Penicillamine (1)
1,4-Dihydroxy-2-Naphthoic Acid (1)
1-Methyl-1,2-Dihydropyridine-3-Carboxamide (1)
Bz-Arg-Oet (1)
N-Feruloylaspartic Acid (1)
Negletein 6-[Rhamnosyl-(1->2)-Fucoside] (1)
Oxidized Dithiothreitol (1)
7,8-Dichloro-1,2,3,4-Tetrahydroisoquinoline (1)
3'-N-Acetyl-4'-O-(10,12-Octadecadienoyl)Fusarochromanone (1)
Pgh1 (1)
Bax Inhibitor Peptide V5 (1)

Study type

ChIP-seq (1)
Transcription profiling by array (1)

Release Date

2025 (14)
2024 (12)
2022 (10)
2021 (8)
2023 (5)
2020 (4)
2016 (4)
2019 (3)
2015 (3)
2013 (3)
2026 (2)
2018 (2)
2014 (2)
2011 (1)
2009 (1)
2004 (1)

Lab affiliation

Department of Radiation Biology, Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, China (1)
Second Hospital of Lanzhou University (1)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China (1)

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N-glycoproteomics and SESTAR++ analysis based on SeMOE

The isotopic envelope pattern of selenium is guaranteed by its six stable isotopes with distinctive distribution (74Se, 0.89%; 76Se, 9.37%; 77Se, 7.63%; 78Se, 23.77%; 80Se, 49.61%; 82Se, 8.73%). We postulated that the effective incorporation of selenosugar in glycoproteins would achieve direct isoto...

ORGANISM(S): Homo sapiens (Human)

2023-11-20 | PXD042137 | Pride

Brain transcriptomic response of the threespine stickleback Gasteroteus aculeatus to predator cues

In this study, we used whole genome comparative oligonucleotide microarrays to investigate the brain transcriptomic response to predator cues using the threespine stickleback, Gasteroteus aculeatus. We showed that exposure to olfactory, visual and tactile cues of a predator (rainbow trout, Oncorhync...

ORGANISM(S): Gasterosteus aculeatus

2011-04-24 | E-GEOD-21599 | biostudies-arrayexpress

Proteomic analysis of SIRT1-interacting proteins in rat nucleus pulposus cells

This study identifies proteins interacting with SIRT1 in nucleus pulposus cells. We performed a pulldown assay using anti-SIRT1 antibodies. The analysis identified 540 unique SIRT1-binding partners.

ORGANISM(S): Rattus norvegicus (Rat)

2026-04-27 | PXD073166 | Pride

Nucleus pulposus cells Proteomics Sirt1 Co-immunoprecipitation

Functional and Transcriptome Analysis Reveal Specific Roles of Dimocarpus longan DlRan3A and DlRan3B in Root Hair Development, Reproductive Growth, and Stress Tolerance.

Not available

S-EPMC10891736 | biostudies-literature

CPA4 is a promising diagnostic serum biomarker for pancreatic cancer.

Not available

S-EPMC4759400 | biostudies-literature

DysPIA: A Novel Dysregulated Pathway Identification Analysis Method.

Not available

S-EPMC8287415 | biostudies-literature