Xu San S - OmicsDI

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Unknown (1876)
Proteomics (80)
Transcriptomics (31)
Metabolomics (12)
Genomics (3)
Models (2)
Genomic (1)

Organisms

Homo sapiens (52)
Mus musculus (19)
Rattus norvegicus (4)
Arabidopsis thaliana (3)
Gallus gallus (2)
Drosophila melanogaster (2)
Mycolicibacterium smegmatis MC2 155 (2)
Azumapecten farreri (2)
Escherichia coli (2)
Saccharomyces cerevisiae (2)
Actinobacillus pleuropneumoniae serovar 3 str. JL03 (1)
Oryza sativa (1)
Glycine max (1)
Candida albicans (1)
unclassified Proteininae (1)
Archaea (1)
Bacteroides fragilis NCTC 9343 (1)
Chlorocebus aethiops (1)
Chlorocebus sabaeus (1)
Crocus sativus (1)
Eimeria necatrix (1)
Erysipelothrix rhusiopathiae (1)
Macaca mulatta (1)
Nitrosopumilus maritimus SCM1 (1)
Ornithodoros sp. AJM-2011b (1)
Plasmodium sp. pBT9 (1)
Pseudomonas aeruginosa PAO1 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Solanum tuberosum (1)
Spinacia oleracea (1)

Repository

pride (75)
biostudies-arrayexpress (34)
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Cell culture (23)
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Breast cancer (7)
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Technology Type

Mass Spectrometry (75)
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SWATH MS (4)
Mass spectrometry assay (2)
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All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - alternating - hilic (2)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive – rp (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)

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2025 (16)
2023 (14)
2021 (12)
2014 (12)
2019 (9)
2020 (8)
2018 (8)
2022 (8)
2026 (7)
2024 (6)
2015 (6)
2013 (4)
2010 (4)
2016 (3)
2012 (3)
2011 (3)
2017 (3)
2009 (1)
2005 (1)

CHEBI ID

CHEBI:30915 (6)
CHEBI:15741 (5)
CHEBI:16335 (5)
CHEBI:16704 (5)
CHEBI:16708 (5)
CHEBI:18012 (5)
CHEBI:7916 (5)
CHEBI:15891 (4)
CHEBI:16027 (4)
CHEBI:16750 (4)
CHEBI:16856 (4)
CHEBI:16865 (4)
CHEBI:16870 (4)
CHEBI:16919 (4)
CHEBI:17234 (4)
CHEBI:17295 (4)
CHEBI:17345 (4)
CHEBI:17509 (4)
CHEBI:17775 (4)
CHEBI:17858 (4)
CHEBI:26271 (4)
CHEBI:27897 (4)
CHEBI:28300 (4)
CHEBI:29016 (4)
CHEBI:30769 (4)
CHEBI:6650 (4)
CHEBI:15318 (3)
CHEBI:15422 (3)
CHEBI:15428 (3)
CHEBI:15724 (3)

Metabolite Name

Taurine (4)
Adenine (3)
Fumaric acid (3)
L-Tyrosine (3)
N-Acetyl-L-aspartic acid (3)
N-Acetyl-L-phenylalanine (3)
Nicotinic acid (3)
Ornithine (3)
Uridine (3)
12-Hydroxydodecanoic acid (2)
2-Hydroxycinnamic acid (2)
21-Deoxycortisol (2)
4-Nitrophenol (2)
4-Pyridoxic acid (2)
5-Hydroxymethyluracil (2)
Adenosine (2)
Adonitol (2)
Arginine (2)
Asparagine (2)
Citraconic acid (2)
Citric acid (2)
Creatine (2)
D-Fructose (2)
D-Glucuronic acid (2)
D-Lysine (2)
Dihydroxyacetone phosphate (2)
Glucose (2)
Glucose 6-phosphate (2)
Glutathione (2)
Glycerophosphocholine (2)

IsPrivate

False (2)

Modelling Approach

Constraint-based model (2)

Modification

15.994915 (2)
57.021464 (2)
71.037114 (2)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (8)
RNA-seq of non coding RNA (3)
ChIP-seq (2)
Transcription profiling by SAGE (1)
Comparative genomic hybridization by array (1)
Hi-C (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (209)
2025 (199)
2024 (193)
2021 (180)
2022 (180)
2020 (155)
2019 (133)
2018 (121)
2017 (89)
2016 (86)
2014 (85)
2015 (68)
2013 (46)
2012 (40)
2026 (39)
2011 (31)
2010 (22)
2009 (18)
2008 (5)
2005 (2)
2007 (2)
2006 (2)
2004 (2)
2003 (2)
1999 (1)

Lab affiliation

Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (3)
Carnegie Mass Spectrometry Facility (2)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (2)
Professor Emeritus Department of Chemistry The University of Texas at San Antonio Effective July 1, 2026: Johnson Foundation Professor of Chemical Enzymology Department of Biochemistry and Biophysics, Perelman School of Medicine Department of Chemistry, School of Arts and Sciences University of Pennsylvania, Philadelphia, PA 19104 (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
Beijing proteome research center (1)
Beijing proteome research center, Beijing, China (1)
CVG group, Tenaya Therapeutics Inc., South San Francisco, CA United States (1)
Center for Innovative Engineering Technology in Traditional Chinese Medicine, Liaoning University of Traditional Chinese Medicine, Shenyang, China (1)
Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China (1)
Chinese Academy of Inspection and Quarantine (1)
College of Animal Science and Veterinary Medicine, Huazhong Agricultural University, Wuhan, China (1)
College of Marine Life Sciences, Ocean University of China, Qingdao, China (1)
College of Marine Science and Engineering, Nanjing Normal University, Nanjing 210023, China (1)
College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, PR China (1)
Cutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129, United States (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (1)
Department of Anatomy and Cell Biology, School of Dental Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Department of Biochemistry and Molecular Biology and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, VIC 3010, Australia (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (1)
Department of Medicine Beth Israel Deaconess Medical Center Boston, MA (1)
Department of Microbiology & Immunology School of Medicine University of Louisville CTRB, Room 309 Louisville, KY, USA 40202 (1)
Department of Neurology, UCLA (1)
Department of Pathology, Dana-Farber/Harvard Cancer Center, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA. (1)
Department of Pathology, Stanford University School of Medicine; Stanford, CA, USA (1)
Department of Surgery, University of Michigan Medical School, Ann Arbor, MI, USA (1)
Department of Urology, Department of Cellular and Molecular Pharmacology and Helen Diller Family Comprehensive Cancer Center.University of California, San Francisco (1)

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Research on the quality markers of antioxidant activity of Kai-Xin-San based on spectrum-effect relationship

Kai-Xin-San (KXS) is one of the classic famous traditional Chinese medicine prescriptions for amnesia, which has been applied for thousands of years. Modern pharmacological research has found that KXS has significant therapeutic efficacy on nervous system diseases, which is related to its antioxidan...

2023-12-21 | MTBLS8806 | MetaboLights

HPLC-MS/MS analysis of the S-monooxygenated S-Trp (O=S-Trp) bearing peptide in EcKatG S-Trp105

A sulfur-containing analog of tryptophan, thiotryptophan (3-benzothienyl-L-alanine, S-Trp), was genetically incorporated into EcKatG to replace the MYW-forming tryptophan, W105. The S-Trp-bearing peptide was isolated using trypsin digestion followed by HPLC separation. Tandem mass spectrometry (MS/M...

ORGANISM(S): Escherichia coli

2026-05-13 | PXD078006 | Pride

HPLC-MS/MS analysis of the S-monooxygenated S-Trp (O=S-Trp) bearing peptide in heme reconstituted EcKatG S-Trp105

A sulfur-containing analog of tryptophan, thiotryptophan (3-benzothienyl-L-alanine, S-Trp), was genetically incorporated into EcKatG to replace the MYW-forming tryptophan, W105. The heme free apo-protein was purified, after heme-reconstitution and peroxide treatment, the S-Trp-bearing peptide was is...

ORGANISM(S): Escherichia coli

2026-05-13 | PXD078069 | Pride

Catalase-peroxidase Non-canical amino acid Katg

Knockdown of long noncoding RNA SAN rejuvenates aged adipose-derived stem cells via miR-143-3p/ADD3 axis.

Not available

S-EPMC10441736 | biostudies-literature

Shengjiang San alleviated sepsis-induced lung injury through its bidirectional regulatory effect.

Not available

S-EPMC10108513 | biostudies-literature

New Perspectives on the Electronic and Geometric Structure of Au70S20(PPh3)12 Cluster: Superatomic-Network Core Protected by Novel Au12(µ3-S)10 Staple Motifs.

Not available

S-EPMC6722785 | biostudies-literature