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Unknown
(4435)
Transcriptomics
(88)
Genomics
(50)
Proteomics
(43)
Metabolomics
(8)
Organisms
Homo sapiens
(75)
Mus musculus
(36)
Arabidopsis thaliana
(25)
Schizophyllum commune H4-8
(11)
Mycobacterium tuberculosis SP7
(11)
Oryza sativa Japonica Group
(11)
Eriocheir sinensis
(11)
Candidatus Endoriftia persephonae
(11)
Mycobacterium tuberculosis SP10
(11)
Mycobacterium tuberculosis SP13
(11)
Mycobacterium tuberculosis SP22
(11)
Enterobacter ludwigii
(11)
Chlamydomonas reinhardtii
(11)
Lama
(11)
Pyricularia oryzae P131
(11)
Glycine max
(6)
Triticum aestivum
(4)
Drosophila melanogaster
(2)
Zea mays
(2)
Bartonella henselae str. Houston-1
(2)
Aspergillus oryzae
(1)
Hordeum vulgare
(1)
Oryza sativa Japonica Group
(1)
Gallus gallus
(1)
Rattus norvegicus
(1)
Cicer arietinum
(1)
Catharanthus roseus
(1)
Musa acuminata
(1)
cellular organisms
(1)
Saccharomyces cerevisiae
(1)
Organisms
Acetobacter pasteurianus
(1)
Escherichia coli str. K-12 substr. W3110
(1)
Kluyveromyces marxianus
(1)
Repository
biostudies-arrayexpress
(97)
EGA
(39)
jPOST
(31)
pride
(11)
MetaboLights
(8)
ENA
(3)
MassIVE
(1)
Tissue
Permanent cell line cell
(2)
Fat cell
(1)
Blood serum
(1)
Plant cell
(1)
Testis
(1)
Cell culture
(1)
Whole body
(1)
Disease
Osteosarcoma subtype fibroblastic
(1)
Ehlers-Danlos syndrome classic type 1
(1)
Disease free
(1)
Technology Type
Mass Spectrometry
(11)
Mass spectrometry
(8)
Affinity purification coupled with mass spectrometry proteomics
(8)
Gel-based experiment
(3)
Shotgun proteomics
(2)
Affymetrix_250K(Nsp) - gtype
(1)
Illumina HiSeq 2500
(1)
SRM/MRM
(1)
Data-dependent acquisition
(1)
Instrument Platform
Capillary electrophoresis MS - positive
(3)
Capillary electrophoresis MS - negative
(3)
Liquid Chromatography MS - negative - reverse phase
(3)
Liquid Chromatography MS - positive - reverse phase
(3)
DNA Microarray Scanner BA [Agilent Technologies]
(2)
Illumina HiSeq 2500
(2)
Illumina Genome Analyzer IIx
(1)
Illumina HiSeq 4000
(1)
LTQ
(1)
LTQ FT-Ultra (Thermo Scientific)
(1)
Liquid Chromatography MS - positive
(1)
Gas Chromatography MS - positive
(1)
Publication Date
2023
(17)
2012
(16)
2011
(15)
2014
(14)
2013
(12)
2010
(12)
2022
(9)
2020
(8)
2019
(7)
2009
(7)
2018
(5)
2016
(5)
2024
(5)
2021
(4)
2017
(3)
2008
(3)
2026
(2)
2015
(1)
2007
(1)
2005
(1)
2025
(1)
CHEBI ID
CHEBI:26984
(6)
CHEBI:29016
(6)
CHEBI:16811
(6)
CHEBI:15901
(6)
CHEBI:17376
(5)
CHEBI:32805
(5)
CHEBI:22653
(5)
CHEBI:28300
(5)
CHEBI:26271
(5)
CHEBI:16449
(5)
CHEBI:27570
(5)
CHEBI:27266
(5)
CHEBI:28044
(5)
CHEBI:17822
(5)
CHEBI:16680
(5)
CHEBI:16765
(5)
CHEBI:17859
(5)
CHEBI:16610
(5)
CHEBI:28790
(5)
CHEBI:15727
(5)
CHEBI:16264
(5)
CHEBI:17895
(5)
CHEBI:16020
(5)
CHEBI:30746
(5)
CHEBI:27823
(5)
CHEBI:16160
(5)
CHEBI:16335
(5)
CHEBI:17521
(5)
CHEBI:16750
(5)
CHEBI:17750
(5)
Metabolite Name
Glycerophosphate
(3)
3-Ureidopropionate
(3)
3-Hydroxy-3-methylglutarate
(3)
2-Oxoglutarate
(3)
Threonate
(3)
Malonate
(3)
Urate
(3)
N-Formylmethionine
(3)
NADH
(3)
Fumarate
(3)
Citrate
(3)
Pyruvate
(3)
Deamido-NAD+
(2)
Malonyl CoA
(2)
Isobutyryl CoA
(2)
P1, P4-Di(adenosine-5') tetraphosphate
(2)
CIMP
(2)
2',3'-cCMP
(2)
2-Deoxyribose 1-phosphate
(2)
Mucate
(2)
Saccharate
(2)
3-Indolebutyrate
(2)
Dodecanoate
(2)
O-Hydroxyhippurate
(2)
Phenaceturate
(2)
Undecanoate
(2)
O-Phosphoserine
(2)
Serine O-sulfate
(2)
Phenyl phosphate
(2)
2-Quinolinecarboxylate
(2)
First Public Date
2020
(1)
2019
(1)
2015
(1)
Classification
bacteria
(1)
Study type
Transcription profiling by array
(73)
Methylation profiling by high throughput sequencing
(5)
ChIP-chip by tiling array
(4)
Genotyping by array
(3)
ChIP-seq
(3)
RNA-seq of coding RNA
(3)
Animal - High-throughput sequencing
(1)
Cell line - High-throughput sequencing
(1)
Comparative genomic hybridization by array
(1)
Other
(1)
RNA-seq of total RNA
(1)
Release Date
2025
(516)
2022
(516)
2023
(442)
2021
(438)
2024
(419)
2020
(376)
2019
(293)
2018
(241)
2017
(193)
2016
(192)
2015
(170)
2014
(149)
2013
(99)
2012
(92)
2026
(88)
2011
(62)
2010
(53)
2008
(43)
2009
(38)
2007
(20)
2005
(16)
2006
(16)
2003
(13)
2000
(12)
2002
(11)
2004
(8)
2001
(6)
1998
(5)
1999
(4)
1997
(1)
Lab affiliation
Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan.
(4)
Research Institute for Microbial Diseases
(2)
Grad. Sch. Agr. Life Sci., Univ. Tokyo
(1)
Studying the Dynamics of Proteomes, Large-Scale Biology, CEA Grenoble
(1)
Department of Redox Molecular Medicine, Tohoku University Graduate School of Medicine
(1)
Shinshu University
(1)
ETH Zurich
(1)
Tags
pathogen:bacterium
(1)
pathogen
(1)
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Escherichia coli str. K-12 substr. W3110
Escherichia coli str. K-12 substr. W3110 (thermal-adaptated strain) Whole Genome Sequencing Project
PRJDB7158
|
ENA
Cite
Risk assessment of infection with severe fever with thrombocytopenia syndrome virus based on a 10-year serosurveillance in Yamaguchi Prefecture.
Not available
S-EPMC9412060
|
biostudies-literature
Cite
Characterization of rice KT/HAK/KUP potassium transporters and K
+
uptake by HAK1 from
Oryza sativa
.
Not available
S-EPMC6879396
|
biostudies-literature
Cite
The discovery and characterization of K-563, a novel inhibitor of the Keap1/Nrf2 pathway produced by Streptomyces sp.
Not available
S-EPMC6434342
|
biostudies-literature
Cite
Yamaguchi esterification: a key step toward the synthesis of natural products and their analogs-a review.
Not available
S-EPMC11503016
|
biostudies-literature
Cite
Transcriptional Repression of CCL2 by K
Ca
3.1 K
+
Channel Activation and LRRC8A Anion Channel Inhibition in THP-1-Differentiated M
2
Macrophages.
Not available
S-EPMC12347553
|
biostudies-literature
Cite
Acetobacter pasteurianus
Acetobacter pasteurianus K-1034 (thermal-adapted strain) genome sequencing project
PRJDB10086
|
ENA
Cite
Phenotypic Classification of Scalp High-Frequency Oscillations in Absence Epilepsy Based on Multiple Characteristics Using K-Means Clustering.
Not available
S-EPMC12837731
|
biostudies-literature
Cite
Transcriptional activation of the anchoring protein SAP97 by heat shock factor (HSF)-1 stabilizes K(v) 1.5 channels in HL-1 cells.
Not available
S-EPMC3081125
|
biostudies-literature
Cite
The novel potent TEAD inhibitor, K-975, inhibits YAP1/TAZ-TEAD protein-protein interactions and exerts an anti-tumor effect on malignant pleural mesothelioma.
Not available
S-EPMC7783735
|
biostudies-literature
Cite
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