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TranscriptomicsshRNA human ME180 cells depleted for p63 versus wildtype ME180 cells
We investigated the transcriptional effects of p63 binding by analyzing ME180 cells depleted for all p63 isoforms via expression of a small hairpin RNA (shRNA) targeting the p63 oligomerization domain. Experiment Overall Design: Data were collected from three biological replicates for p63-depleted a...
ORGANISM(S): Homo sapiens 
2008-06-14 | E-GEOD-5993 | biostudies-arrayexpress
Transcriptomicsabaseed-ABA signaling in Arabidopsis seeds
ra14-04_nced - abaseed - Identification of abscisic acid (ABA) signaling factors and targets in Arabidopsis developing seeds by comparing ABA deficient and wild type genotypes. Transcriptome comparison of developing seeds harvested at 14 DAP from two ABA-deficient mutants (nced2 nced5 nced9 and nced...
ORGANISM(S): Arabidopsis thaliana 
2015-07-01 | E-GEOD-68088 | biostudies-arrayexpress
Transcriptomicsoligosaccharide treatment - 24 hpt-Effect of oligosaccharide treatments on gene expression.
ra10-03_eliciteur - oligosaccharide treatment - 24 hpt - Do the treatments modify gene expression in a way that can give us a hint as to their use in crop protection? What is the effect of the adjuvant on gene expression? - 6,5-week-old arabidopsis plants grown in short-day photoperiod were spray-tr...
ORGANISM(S): Arabidopsis thaliana 
2011-11-01 | E-GEOD-30983 | biostudies-arrayexpress
Transcriptomicsaba4/1-Analyse of arabidopsis mutants and transforming affected in the synthesis of abscissic acid.
ra07-03_aba4 - aba4/1 - Identification of genes deregulated in aba4 mutant or overexpressers. - Comparison of different genotypes to wild type Col-0: aba4-3 mutant, two independent 35S-ABA4 transgenic lines and two independent 35S-NCED6 transgenic lines. Keywords: gene knock in (transgenic),gene kno...
ORGANISM(S): Arabidopsis thaliana 
2008-05-20 | E-GEOD-10357 | biostudies-arrayexpress
no omics definedmaternal/embryonic aba-1-Analysis of the role of maternal and embryonic ABA in seeds.
ra07-02_aba2 - maternal/embryonic aba-1 - Identification of genes regulated by maternal and embryonic ABA - Comparison of expression in seeds (15 days after pollination) of aba2-2 mutant to wild type (Col-0), aba2 (female) x Col-0 (male) crossing, and aba2-2 sprayed with ABA (100 micro M, twice a we...
ORGANISM(S): Arabidopsis thaliana 
2008-05-28 | E-GEOD-10674 | biostudies-arrayexpress
TranscriptomicsENCODE: PolyA+ RNA from retinoic acid stimulated HL-60 cells at 4 time points (NCBIv35)
PolyA+ RNA from retinoic acid stimulated HL-60 cells at 0, 2, 8, or 32 hours using Affymetrix ENCODE tiling chip with NCBI build 35 annotation. PolyA+ RNA from retinoic acid stimulated HL-60 cells at 0, 2, 8, or 32 hours.
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-3662 | biostudies-arrayexpress
TranscriptomicsENCODE: p63ActD & p63_mActD ChIP of retinoic acid-stimulated ME180 cells at 0 h (NCBIv35) - strict analysis parameters
p63 with and without actinomycin D treatment ChIP from retinoic acid stimulated ME180 Cells at 0 hours using Affymetrix ENCODE tiling chip with NCBI build 35 annotation. p63_ActD and p63_mActD ChIP from retinoic acid stimulated ME180 Cells, 0 hours.
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-3661 | biostudies-arrayexpress
TranscriptomicsENCODE: H3K9K14D ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters
H3K9K14D ChIP-chip of retinoic acid-stimulated HL60 cells at 0, 2, 8, or 32 hours using Affymetrix ENCODE tiling chip with NCBI build 35 annotation. H3K9K14D ChIP-chip of retinoic acid-stimulated HL60 cells at 0, 2, 8, or 32 hours.
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-3658 | biostudies-arrayexpress
TranscriptomicsENCODE: HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters
HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 0, 2, 8, or 32 hours using Affymetrix ENCODE tiling chip with NCBI build 35 annotation. HisH4 ChIP-chip of retinoic acid-stimulated HL60 cells at 0, 2, 8, or 32 hours.
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-3659 | biostudies-arrayexpress
TranscriptomicsENCODE: Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 4 timepoints (NCBIv35) - strict analysis parameters
Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 0, 2, 8, or 32 hours using Affymetrix ENCODE tiling chip with NCBI build 35 annotation. Pol2 ChIP-chip of retinoic acid-stimulated HL60 cells at 0, 2, 8, or 32 hours.
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-3660 | biostudies-arrayexpress
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