Yang Lu L - OmicsDI

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Unknown (7359)
Proteomics (211)
Transcriptomics (110)
Metabolomics (57)
Genomics (41)

Organisms

Homo sapiens (126)
Mus musculus (52)
Gallus gallus (8)
Rattus norvegicus (7)
Drosophila melanogaster (6)
Severe acute respiratory syndrome coronavirus 2 (5)
Saccharomyces cerevisiae (3)
Arabidopsis thaliana (3)
Ovis aries (3)
Populus tomentosa (2)
Toxoplasma gondii (2)
Zea mays (2)
Streptomyces avermitilis (2)
Triticum aestivum (2)
Nannospalax galili (1)
Bos grunniens (1)
Brassica oleracea (1)
Deinococcus gobiensis (1)
Arachis hypogaea (1)
Zymomonas mobilis (1)
Brassica rapa subsp. pekinensis (1)
Oryza sativa Indica Group (1)
Staphylococcus aureus (1)
Pseudomonas aeruginosa PAO1 (1)
Oryza sativa Japonica Group (1)
Sus scrofa (1)
Danio rerio (1)
Staphylococcus aureus subsp. aureus RN4220 (1)
Pyricularia oryzae P131 (1)
Mycobacteroides abscessus ATCC 19977 (1)

Organisms

Homo sapiens (2)
Streptomyces avermitilis (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (121)
iProX (100)
pride (99)
MetaboLights (56)
EGA (22)
MassIVE (9)
geo (4)
ENA (4)
jPOST (3)
GNPS (1)

Tissue

Cell culture (16)
Epithelial cell (9)
Plant cell (5)
Liver (5)
Blood cell (5)
Blood serum (4)
Testis (4)
Whole body (4)
Leaf (4)
Permanent cell line cell (4)
Hepatocyte (3)
Lung (3)
Byssus (2)
Malignant cell (2)
HEK-293T cell (2)
Melanocyte (2)
Heart (2)
Blood plasma (2)
Stem cell (2)
Spleen (2)
B cell (2)
T cell (2)
Blood (2)
Cervical epithelial cell (1)
Ovary epithelium cell line (1)
Short term hematopoietic stem cell (1)
T-cell acute lymphoblastic leukemia cell (1)
Pancreatic cancer cell (1)
Sertoli cell (1)
Thallus (1)

Disease

Disease free (6)
Cervix carcinoma (3)
Acute leukemia (3)
Neuroblastoma (2)
Ovarian cancer (1)
Primary ovarian insufficiency (1)
Hyperhomocysteinemia (1)
Avian influenza (1)
Skin melanoma (1)
Brain glioblastoma multiforme (1)
Liver disease (1)
Mixed disorder as reaction to stress (1)
Lung cancer (1)
Chronic myeloid leukemia (1)
Melanoma (1)
Cardiovascular system disease (1)
Pancreatic cancer (1)
Alzheimer's disease (1)
Renal cell carcinoma (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (99)
Mass spectrometry (50)
Shotgun proteomics (34)
Data-dependent acquisition (13)
Bottom-up proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (9)
Top-down proteomics (8)
Gel-based experiment (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Data-independent acquisition (5)
All-ion fragmentation (4)
NMR spectroscopy (3)
Mass spectrometry assay (3)
Proteogenomics (3)
Immunopeptidomics (3)
Illumina HiSeq 2000 (2)
Affymetrix/Illumina (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
RNA mass spectrometry (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (25)
Liquid Chromatography MS - negative - reverse phase (23)
Liquid Chromatography MS - negative - hilic (7)
Liquid Chromatography MS - positive - hilic (7)
Liquid Chromatography MS - (4)
Illumina HiSeq 4000 (3)
NextSeq 500 (3)
Q Exactive (3)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - negative (3)
Illumina NovaSeq 6000 (2)
Agilent 5975E GC/MSD (Agilent) (2)
Bruker (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Element AVITI (1)
Illumina Genome Analyzer IIx (1)
NA (1)
Illumina HiSeq 2000 (1)
MicrOTOF-Q II (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion ETD (1)
6540 Q-TOF LC/MS (1)
SolariX (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Orbitrap Fusion Lumos (1)
Quattro micro API (Waters) (1)
GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - negative - direct infusion (1)

Publication Date

2025 (44)
2024 (31)
2023 (31)
2026 (30)
2022 (27)
2021 (24)
2014 (19)
2013 (19)
2016 (17)
2012 (16)
2010 (14)
2011 (13)
2019 (11)
2015 (11)
2020 (9)
2018 (8)
2017 (6)
2009 (5)
2008 (3)
2007 (1)
2006 (1)
2005 (1)
2002 (1)

CHEBI ID

CHEBI:16704 (23)
CHEBI:17368 (22)
CHEBI:15741 (21)
CHEBI:30769 (21)
CHEBI:15354 (20)
CHEBI:16750 (19)
CHEBI:17750 (19)
CHEBI:17895 (19)
CHEBI:6650 (18)
CHEBI:15891 (18)
CHEBI:18183 (18)
CHEBI:18012 (17)
CHEBI:16919 (17)
CHEBI:28300 (16)
CHEBI:15428 (16)
CHEBI:16335 (16)
CHEBI:7916 (16)
CHEBI:15971 (16)
CHEBI:16015 (16)
CHEBI:30915 (16)
CHEBI:16737 (16)
CHEBI:17295 (16)
CHEBI:17596 (16)
CHEBI:16708 (15)
CHEBI:17015 (15)
CHEBI:17154 (15)
CHEBI:17568 (15)
CHEBI:17509 (15)
CHEBI:18211 (15)
CHEBI:27897 (15)

Metabolite Name

Glutamine (12)
Creatine (12)
Hypoxanthine (12)
Choline (11)
Uric acid (11)
Guanosine (11)
Glycine (10)
Valine (10)
Betaine (10)
Pyroglutamic acid (10)
Adenosine (10)
Uridine (10)
Leucine (9)
Uracil (9)
Alanine (9)
Threonine (9)
Kynurenic acid (8)
Ornithine (8)
Pyridoxine (8)
Methionine (8)
Taurine (8)
Xanthosine (8)
Cholic acid (8)
Serine (8)
Proline (8)
Phenylalanine (8)
Adenine (8)
Xanthine (8)
Creatinine (8)
Glycerophosphocholine (8)

First Public Date

2014 (2)
2022 (1)
2015 (1)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (24)
ChIP-seq (13)
RNA-seq of non coding RNA (8)
Transcription profiling by RT-PCR (4)
Comparative genomic hybridization by array (3)
Other (3)
ATAC-seq (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Methylation profiling by array (1)
CUT&RUN (1)

Release Date

2025 (1139)
2022 (991)
2024 (924)
2023 (904)
2021 (782)
2020 (577)
2019 (421)
2018 (324)
2016 (259)
2017 (259)
2015 (202)
2014 (167)
2026 (160)
2013 (124)
2012 (92)
2011 (48)
2010 (35)
2009 (25)
2008 (20)
2007 (10)
2006 (5)
2002 (4)
2005 (3)
2001 (2)
2004 (1)
2003 (1)
2000 (1)

Lab affiliation

BGI Research (3)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Fudan University (2)
Zhejiang University (2)
University of the Pacific (2)
Department of Immunology, Tianjin Medical University, Tianjin, China (1)
Nanjing First Hospital (1)
Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI, USA Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
lushuaiyao's lab, Chinese academic and medical colledge&peking union medical colledge, institute of medical biology (kunming, Yun nan Province) (1)
NanKai university (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)
El Bachir Affar, PhD, Professor Department of Medicine, University of Montreal Director of the Cell Signaling and Cancer Research Unit Research Center, Maisonneuve-Rosemont Hospital 5415 Assomption Blvd., Montreal, Quebec, H1T 2M4, CANADA Tel: 514 252-3400 (Ext: 3343) (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Animal Reproduction Institute, Guangxi University, Nanning, Guangxi, China (1)
3. College of Pharmacy / International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of Ministry of Education (MOE) of China, Jinan University, Guangzhou 510632, China (1)
Stanford University School of Medicine, Department of Neurology and Neurological Sciences, Stanford, CA 94305, USA (1)
Laboratory of Integrative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences; Guangzhou, 510530, China. (1)
Institute of Medical Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Kunming, China；State Key Laboratory of Medical Molecular Biology, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Medical Primate Research Center, Neuroscience Center, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (1)
Institute of Medical Biology, Chinese Academy of Medical Sciences, Peking Union Medical College, Kunming, China State Key Laboratory of Medical Molecular Biology, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Medical Primate Research Center, Neuroscience Center, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing, China (1)
MOE Key Laboratory of Tumor Molecular Biology and Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, Jinan University, Guangzhou, China (1)
College of Marine Life Sciences, Ocean University of China, Qingdao, China (1)
School of Chinese Medicine, Hong Kong Baptist University (1)

Tags

xref:PubMed:22561152 (1)
xref:PubMed:19656197 (1)

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L-fucose and fucoidan alleviate high-salt diet-promoted acute inflammation

Excessive salt intake is a widespread health issue observed in almost every country around the world. A high salt diet (HSD) has a strong correlation with numerous diseases, including hypertension, chronic kidney disease and autoimmune disorders. However, the mechanisms underlying HSD-promotion o...

2024-02-21 | MTBLS9134 | MetaboLights

Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

3C-seq of HT29 cells with CCAT1-L knockdown or scramble knockdown

CCAT1-L is a highly expressed long noncoding RNA located in the colorectal cancer specific super enhance region about 500 kb upstream of MYC gene. Knockdown of CCAT1-L significantly down-regulated interaction frequency between CCAT1 and MYC locus and repress MYC expression, suggesting a long-range c...

ORGANISM(S): Homo sapiens

2014-02-22 | E-GEOD-55261 | biostudies-arrayexpress

SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia

Acute myeloid leukemia (AML) cells rely on phospho-signaling pathways to gain unlimited proliferation potential. Here, we used domain-focused CRISPR screening to identify the nuclear phosphatase SCP4 as a dependency in AML, yet this enzyme is dispensable in normal hematopoietic progenitor cells. Usi...

2025-05-29 | MTBLS3707 | MetaboLights

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

LC-MS/MS data of tree foliar samples in Yang Jie lab from Sun Lu - 2023

A spectrum dataset with 329 tree leaf samples and a blank control file from Yunnan Province, Southwest China. Collection and extraction was completed in Yang Jie Group

ORGANISM(S): 329 Leaf Samples Over 206 Tree Species And A Blank Control File

MSV000092950 | MassIVE

Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

ORGANISM(S): Streptomyces avermitilis

2009-07-02 | GSE16892 | GEO

Gene expression in epithelial and non-epithelial cells of renal origin

We aimed to define epithelial-specific genes in the kidney. In the developing mouse kidney at E12.5 epithelial cells are restricted to the ureteric bud, while mesenchymal cells surrounding the ureteric bud are non-epithelial. The mouse renal epithelial cell line mIMCD-3 was used to represent kidney ...

ORGANISM(S): Mus musculus

2010-09-23 | E-GEOD-24295 | biostudies-arrayexpress

Stable Unpaired Electron States in the Lu-Lu Bond Leading to the Absence of Odd-Even Parity in the Kondo Effect of Lu<sub>2</sub>@C<sub>82</sub> Transistors.

Not available

S-EPMC12005644 | biostudies-literature

Metabolic Signatures of Kidney Yang Deficiency Syndrome and Protective Effects of Two Herbal Extracts in Rats Using GC/TOF MS.

Not available

S-EPMC3789486 | biostudies-literature