Yao S S - OmicsDI

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Unknown (12017)
Proteomics (270)
Transcriptomics (180)
Metabolomics (46)
Genomics (44)
Models (1)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (161)
Mus musculus (82)
Rattus norvegicus (9)
Arabidopsis thaliana (6)
Bos taurus (6)
Oncorhynchus mykiss (3)
Danio rerio (3)
Escherichia coli (3)
Oryza sativa (3)
Citrus reticulata (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
Zea mays (2)
Triticum aestivum (2)
Brassica napus (2)
Mammalia (1)
Brassica rapa subsp. oleifera (1)
Dunaliella tertiolecta (1)
Penicillium oxalicum (1)
Ostrinia nubilalis (1)
Saccharina japonica (1)
Staphylococcus aureus subsp. aureus RN4220 (1)
Mustela putorius furo (1)
Carassius auratus (1)
Escherichia coli str. K-12 substr. W3110 (1)
Arachis hypogaea (1)
Staphylococcus aureus subsp. aureus Mu50 (1)
Brassica rapa subsp. pekinensis (1)
Prunus persica (1)
Aspergillus fumigatus (1)
Medicago truncatula (1)

Organisms

Homo sapiens (3)

Repository

biostudies-arrayexpress (203)
pride (142)
iProX (92)
MetaboLights (45)
MassIVE (17)
EGA (15)
PeptideAtlas (13)
jPOST (5)
ENA (5)
BioModels (1)
dbGaP (1)
geo (1)
GNPS (1)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (34)
Epithelial cell (13)
Plasma Non-glyco (11)
Brain (10)
Root (10)
Liver (7)
Spleen (6)
Blood (5)
Leaf (5)
Plant cell (5)
Blood plasma (4)
Heart (4)
Lung (4)
T cell (4)
Testis (4)
Whole body (4)
Blood cell (3)
Hepatocyte (3)
Kidney (3)
Male Reproductive System (2)
Abdominal adipose tissue (2)
Flower (2)
Macrophage (2)
Ovary (2)
Pancreas (2)
Permanent cell line cell (2)
Adductor (1)
B cell (1)
HEK-293T cell (1)
HeLa cell (1)

Disease

Disease free (6)
COVID-19 (3)
Colorectal cancer (2)
Colon cancer (2)
Malaria (2)
Non-small cell lung carcinoma (2)
Polycystic ovary syndrome (2)
SS2-infected (1)
Not Available (1)
Abdominal aortic aneurysm (1)
Acute myocardial infarction (1)
Arrhythmogenic right ventricular cardiomyopathy (1)
Brain glioma (1)
Gastric ulcer (1)
Hepatocellular carcinoma (1)
Lung cancer (1)
Lyme disease (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Ovarian serous carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Parkinson's disease (1)
Retinopathy of prematurity (1)
Rheumatoid arthritis (1)
Septicemia (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (142)
Shotgun proteomics (72)
Mass spectrometry (27)
Bottom-up proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (15)
Data-dependent acquisition (12)
Mass spectrometry assay (11)
Gel-based experiment (10)
NMR spectroscopy (8)
Data-independent acquisition (8)
Top-down proteomics (5)
SWATH MS (3)
Mass spectrometry imaging (2)
SRM/MRM (2)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)
Metaproteomics (1)
Proteogenomics (1)

Instrument Platform

LTQ Orbitrap Velos (15)
Liquid Chromatography MS - positive - reverse phase (13)
Liquid Chromatography MS - negative - reverse phase (13)
Liquid Chromatography MS - negative - hilic (9)
Liquid Chromatography MS - positive - hilic (9)
Nuclear Magnetic Resonance (NMR) - (6)
Liquid Chromatography MS - positive - reverse-phase (6)
Liquid Chromatography MS - negative - reverse-phase (6)
LTQ Orbitrap (3)
Q Exactive (3)
Q Exactive HF (3)
Illumina NovaSeq X (2)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Q Exactive Plus (2)
Bruker (2)
Liquid Chromatography MS - positive - HILIC (2)
Illumina Genome Analyzer IIx (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
Instrument (1)
LTQ Orbitrap Velos ETD (1)
Orbitrap Exploris 480 (1)
TimsTOF Pro 2 (1)
Xevo G2-S QTof (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive – rp (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)

Publication Date

2015 (50)
2025 (49)
2022 (46)
2024 (33)
2026 (33)
2021 (33)
2023 (29)
2013 (28)
2016 (25)
2014 (24)
2012 (24)
2011 (20)
2010 (17)
2020 (17)
2019 (12)
2009 (11)
2008 (11)
2018 (7)
2017 (6)
2007 (3)
2006 (1)
2005 (1)

UNIPROT ID/AC

A0A024RC46 (13)
A5A3E0 (13)
A6NNZ2 (13)
B3KML9 (13)
B4DHB3 (13)
B4DL86 (13)
B4DRV9 (13)
B4DY08 (13)
B4E3A4 (13)
C9JM50 (13)
E7EX29 (13)
G8JLB6 (13)
H0YM50 (13)
H7BZ94 (13)
I3L4N8 (13)
J3KPS3 (13)
J3QRK5 (13)
M0QZ52 (13)
O00299 (13)
O14556 (13)
O14818 (13)
O60812 (13)
O75369 (13)
O75369-8 (13)
O75694 (13)
O96020 (1)
Q01094 (1)
P06400 (1)
P24864 (1)
P01106 (1)

ENSEMBL ID

ENSG00000170477 (13)
ENSG00000147251 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16919 (14)
CHEBI:7916 (12)
CHEBI:16704 (12)
CHEBI:15891 (10)
CHEBI:30915 (10)
CHEBI:17568 (10)
CHEBI:15741 (10)
CHEBI:17821 (10)
CHEBI:17368 (10)
CHEBI:16449 (9)
CHEBI:28044 (9)
CHEBI:16335 (9)
CHEBI:16750 (9)
CHEBI:15428 (8)
CHEBI:78320 (8)
CHEBI:16737 (8)
CHEBI:27897 (8)
CHEBI:17895 (8)
CHEBI:17596 (8)
CHEBI:22660 (7)
CHEBI:27266 (7)
CHEBI:16811 (7)
CHEBI:16040 (7)
CHEBI:15727 (7)
CHEBI:17750 (7)
CHEBI:26271 (7)
CHEBI:18012 (7)
CHEBI:16708 (7)
CHEBI:16196 (7)
CHEBI:15756 (7)

Metabolite Name

Creatine (13)
Uridine (11)
Hypoxanthine (11)
Creatinine (10)
Taurine (9)
Guanosine (9)
Adenosine (8)
Betaine (7)
L-Proline (7)
Trigonelline (7)
Pantothenic acid (7)
Thymine (7)
L-Tryptophan (7)
Hippuric acid (7)
Ornithine (6)
Lysine (6)
Histamine (6)
Alanine (6)
Uracil (6)
Threonine (6)
Riboflavin (6)
Proline (6)
Adenine (6)
Glycerophosphocholine (6)
L-Carnitine (6)
L-Methionine (6)
Bilirubin (6)
Inosine (6)
Histidine (5)
Prostaglandin J2 (5)

First Public Date

2023 (2)
2022 (1)
2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Guangzhou Medical University (4)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (3)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China (2)
Departments of Immunology and Radiation Oncology Moffitt Cancer Center Tampa, FL, USA (2)
Division of Nephrology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (2)
Institute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical School, Kunming, China. (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
School of Life Sciences, Xiamen University (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Tianjin Medical University Cancer Institute and Hospital (2)
UT Southwestern Medical Center (2)
XiangYa hospital of Central south university (2)
Zhejiang University (2)
ADLQ (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Beijing University of Chinese Medicine, School of Traditional Chinese Medicine, Attending Physician, Assistant Researcher (1)
Bone Marrow Transplantation Center, Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China (1)
Capital Institute of Pediatrics (1)
Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine (1)
Center for Medical Biotechnology, VIB, 9000 Ghent, Belgium Department of Biochemistry, Ghent University, 9000 Ghent, Belgium (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)
Chengdu university of traditional chinese medicine (1)
China-UK-NYNU-RRES Joint Laboratory of Insect Biology, Nanyang Normal University (NYNU), Nanyang 473061, Henan, People’s Republic of China (1)
Chinese Academy of Medical Science (CAMS) Oxford Institute (COI), University of Oxford; Oxford, U.K.; 3MRC Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford; Oxford, U.K. (1)
College of Agronomy, Gansu AgriculturalUniversity, Lanzhou 730070, China (1)
College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, 310018, China (1)
College of Life Sciences, Nanjing Normal University, 1 Wen Yuan Rd, Nanjing, China (1)
College of Pharmacy, Anhui University of Chinese Medicine, Hefei 230012, China (1)

IsPrivate

False (1)

Study type

Transcription profiling by array (111)
RNA-seq of coding RNA (45)
ChIP-seq (19)
Unknown experiment type (5)
RNA-seq of non coding RNA (5)
Genotyping by array (3)
Comparative genomic hybridization by array (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by SAGE (2)
Other (2)
DNA-seq (2)
Differential (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)

Release Date

2025 (1858)
2022 (1656)
2023 (1537)
2024 (1444)
2021 (1207)
2020 (940)
2019 (659)
2018 (556)
2017 (493)
2016 (411)
2015 (336)
2026 (247)
2014 (237)
2013 (140)
2012 (117)
2011 (106)
2010 (90)
2009 (62)
2008 (57)
2007 (26)
2006 (12)
2005 (11)
2003 (6)
2004 (3)
2001 (3)
2000 (3)
2002 (2)
1999 (1)

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S. aureus gene expression following growth in media containing oleic acid

S. aureus response to exogenous fatty acid (oleic acid) Gene expression profiles were generated by microarray analysis of S. aureus cells grown in media without or with oleic aicd Comparison of expression profiles after growth of S. aureus in exogenous fatty acid S. aureus was grown in media with an...

ORGANISM(S): Staphylococcus aureus subsp. aureus RN4220

2012-12-21 | E-GEOD-36231 | biostudies-arrayexpress

Nine new spider species of <i>Belisana</i> Thorell, 1898 (Araneae, Pholcidae) from karst caves, with a list of species of the genus from Guizhou, southwestern China.

Not available

S-EPMC11530764 | biostudies-literature

Filling a zoogeographical gap in China: Taxonomic descriptions of six new spider species of the <i>Pholcusphungiformes</i> species group (Araneae, Pholcidae).

Not available

S-EPMC11947730 | biostudies-literature

S-nitrosoglutathione reductase alleviates morphine analgesic tolerance by restricting PKCα S-nitrosation.

Not available

S-EPMC11253161 | biostudies-literature

Yao-Shan of traditional Chinese medicine: an old story for metabolic health.

Not available

S-EPMC10468577 | biostudies-literature

Nucleosome repositioning-coupled expression divergence between species

We describe the genome-wide nucleosome profiles for S. bayanus under standard conditions Nucleosomes from S. bayanus was isolated and sequenced using the Illumina GAII platform.

ORGANISM(S): Saccharomyces bayanus

2011-11-10 | E-GEOD-24356 | biostudies-arrayexpress

MS analysis for S-acylation of Lamin A

S-acylation site and modification level of Lamin A

ORGANISM(S): Homo Sapiens

2024-01-09 | PXD048437 |

Free fatty acids stabilize integrin β₁via S-nitrosylation to promote monocyte-endothelial adhesion.

Not available

S-EPMC9808002 | biostudies-literature

Plasma-activated water: An alternative disinfectant for S protein inactivation to prevent SARS-CoV-2 infection.

Not available

S-EPMC7677677 | biostudies-literature