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GenomicsOncotrack DAC
Data Access Committee EGAC00001000469
EGAC00001000469 | EGA
GenomicsGenome-wide map of BACH1 binding in HEK 293T cells
BTB and CNC homology 1 (BACH1) is a heme-binding transcription factor repressing the transcription from a subset of MAF recognition elements (MAREs) at low intracellular heme levels. Upon heme binding, BACH1 is released from the MAREs, resulting in increased expression of antioxidant response genes....
ORGANISM(S): Homo sapiens 
2011-05-13 | E-GEOD-28051 | biostudies-arrayexpress
TranscriptomicsExpression data from knockdown of BACH1 in HEK 293T cells
BTB and CNC homology 1 (BACH1) is a heme-binding transcription factor repressing the transcription from a subset of MAF recognition elements (MAREs) at low intracellular heme levels. Upon heme binding, BACH1 is released from the MAREs, resulting in increased expression of antioxidant response genes....
ORGANISM(S): Homo sapiens 
2011-05-13 | E-GEOD-28050 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Ts65Dn vs control mice in nine different mouse tissues
To understand the molecular basis of Down syndrome pathogenesis, we performed a transcriptome analysis of nine different tissues in Ts65Dn, an established mouse model of human trisomy 21. Ts65Dn mice have segmental trisomy of mouse chromosome 16 with ca. 128 genes at dosage imbalance (Reeves et al. ...
ORGANISM(S): Mus musculus 
2004-04-23 | E-MEXP-102 | biostudies-arrayexpress
TranscriptomicsThe direction of cross affects obesity after puberty in male but not female offspring
We investigated parent-of-origin and allele-specific expression effects on obesity and hepatic gene expression in reciprocal crosses between the Berlin Fat Mouse Inbred line (BFMI) and C57Bl/6NCrl (B6N). We sequenced mRNA extracted from liver tissue of 10 M. Musculus individuals. 4 liver samples wer...
ORGANISM(S): Mus musculus 
2015-11-11 | E-GEOD-74889 | biostudies-arrayexpress
GenomicsWGSeq_HealthyHuman_DATA_SET_xmas_MB_2013_07_10 - samples
HSC73_clone: Bone marrow mononuclear cells from the healthy 73 years old female were thawed and labeled with Alexa-Fluor 488-conjugated anti-CD34 (581, Biolegend), Alexa-Fluor 700-conjugated anti-CD38 (HIT2, eBioscience), a cocktail of APC-conjugated lineage antibodies consisting of anti-CD4 (RPA-T4...
EGAD00001000666 | EGA
TranscriptomicsExon array analysis of two human cell lines (HEK293T Ramos B cell)
In order to compare previously generated transcriptome data by second generation sequencing (Sultan et al. Science 2008), we interrogated the human Affymetrix exon chips 1.0ST using the same source of material. Two biological replicates from HEK293T and B cell lines were hybridized on the human A...
ORGANISM(S): Homo sapiens 
2010-05-15 | E-GEOD-13474 | biostudies-arrayexpress
Genomicsrna_seq_data_freeze_march_2013_DATA_SET_MMML_2012_11_06 - samples
ICGC MMML-seq Data Freeze March 2013 transcriptome sequencing
EGAD00001000356 | EGA
GenomicsMMML_2012_11_06_Methylation450k_case - samples
DNA methylation analysis of 6 primary lymphoma samples
EGAD00010000377 | EGA
GenomicsWGSeq_RNAseq_ChIPseq_Cancer_ICGC_DATA_SET_xmas_MB_2013_07_10 - samples
Whole Genome Seq: Illumina HiSeq sequence data (with >30x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed. Paired-end RNA sequencing reads were mapp...
EGAD00001000664 | EGA
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