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ProteomicsIdentifing YdeH acetylation sites
we found the E. coli major DGC, YdeH, is endogenously acetylated and CobB promotes YdeH activity through deacetylation of YdeH. This experiment will identify the sites that can be acetylated by CobB on YdeH.
ORGANISM(S): Escherichia coli 
2019-06-17 | PXD008113 | Pride
Acetylation Q exactive Ydeh 
ProteomicsProtein Deacetylase CobB Interplays with c-di-GMP
As a ubiquitous bacterial secondary messenger, c-di-GMP plays key regulatory roles in processes like bacterial motility and transcription regulation. We found that c-di-GMP had impact on lysine acetylation level. To further investigate the regulation role, we performed a quantitative analysis of E. ...
ORGANISM(S): Escherichia coli 
2019-06-17 | PXD010558 | Pride
C-di-gmp Ydeh Acetylation 
GenomicsNext Generation Sequencing Facilitates Quantitative Analysis of overexpression ydeH and ydeH (E208,209A) Transcriptomes in Mycobacterium smegmatis
Next Generation Sequencing Facilitates Quantitative Analysis of overexpression ydeH and ydeH (E208,209A) Transcriptomes in Mycobacterium smegmatis
PRJNA414326 | ENA
GenomicsShigella sonnei
Shigella sonnei ydeH Raw sequence reads
PRJNA1237306 | ENA
ProteomicsIdentifying protein acetylation
Five proteins, YdeH, Era, YegE, YeaJ and YihK were mixed and performed the Q Exactive MS analysis to identify the protien acetylation sites.
ORGANISM(S): Escherichia coli 
2019-06-17 | PXD007651 | Pride
Acetylation Q exactive 
UnknownCrosstalk between cyclic-di-guanosine monophosphate and the sensor kinase MtrB regulates MtrA-dependent genes, bacterial growth, biofilm formation and lysosomal trafficking of <i>Mycobacterium tuberculosis</i>.
Not available
S-EPMC12282275 | biostudies-literature
TranscriptomicsNext Generation Sequencing Facilitates Quantitative Analysis of overexpression ydeH and ydeH (E208,209A) Transcriptomes in Mycobacterium smegmatis
Compare the gene expression difference between these two strains by RNA sequencing in Mycobacterium smegmatis
ORGANISM(S): Mycolicibacterium smegmatis 
2018-02-18 | GSE104978 | GEO
TranscriptomicsMixed Culture Gene Expression of E. coli and Pseudomonas aeruginosa grown on defined media with N-acetyl glucosamine
Transcriptional profiles of Escherichia coli MG1655 in mixed culture with Pseudomonas aeruginosa PAO1 showed a number of E. coli genes to be upregulated including purA-F and other genes associated with purine synthesis. In contrast, genes associated with pyrimidine synthesis were unaffected. Competi...
ORGANISM(S): Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 Escherichia coli str. K-12 substr. MG1655 Escherichia coli 
2011-11-29 | GSE26932 | GEO
TranscriptomicsMixed Culture Gene Expression of E. coli and Pseudomonas aeruginosa
Transcriptional profiles of Escherichia coli MG1655 in mixed culture with Pseudomonas aeruginosa PAO1 showed a number of E. coli genes to be upregulated including purA-F and other genes associated with purine synthesis. In contrast, genes associated with pyrimidine synthesis were unaffected. Competi...
ORGANISM(S): Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 Escherichia coli 
2011-11-09 | GSE26931 | GEO
TranscriptomicsMixed Culture Gene Expression of E. coli and Pseudomonas aeruginosa
Transcriptional profiles of Escherichia coli MG1655 in mixed culture with Pseudomonas aeruginosa PAO1 showed a number of E. coli genes to be upregulated including purA-F and other genes associated with purine synthesis. In contrast, genes associated with pyrimidine synthesis were unaffected. Competi...
ORGANISM(S): Escherichia coli 
2011-11-09 | E-GEOD-26931 | biostudies-arrayexpress
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