Ye Jiang J - OmicsDI

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Unknown (1884)
Proteomics (50)
Transcriptomics (15)
Metabolomics (9)
Genomics (3)

Organisms

Schizophyllum commune H4-8 (26)
Mycobacterium tuberculosis SP7 (26)
Oryza sativa Japonica Group (26)
Crotalus durissus terrificus (26)
Eriocheir sinensis (26)
Candidatus Endoriftia persephonae (26)
Mycobacterium tuberculosis SP10 (26)
Mycobacterium tuberculosis SP13 (26)
Mycobacterium tuberculosis SP22 (26)
Enterobacter ludwigii (26)
Chlamydomonas reinhardtii (26)
Lama (26)
Pyricularia oryzae P131 (26)
Enterococcus mundtii CRL35 (26)
Pongo pygmaeus (26)
Oncorhynchus tshawytscha (26)
Pseudomonas canadensis (26)
Strongylocentrotus purpuratus (26)
Influenza A virus (A/California/04/2009(H1N1)) (26)
Salmonella enterica subsp. enterica serovar Typhimurium (26)
Homo (26)
Bradyrhizobium diazoefficiens (26)
Streptococcus pyogenes STAB901 (26)
Homo sapiens (25)
Mus musculus (8)
Ovis aries (3)
Drosophila melanogaster (2)
Bombyx mori (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Caenorhabditis elegans (1)

Repository

pride (26)
iProX (23)
biostudies-arrayexpress (17)
MetaboLights (9)
EGA (1)
MassIVE (1)

Tissue

Epithelial cell (3)
Whole body (3)
Testis (2)
Brain (2)
Regional part of brain (1)
Peritoneal fluid (1)
Posterior silk gland (1)
Cochlea (1)
Nasal mucosa (1)
Epididymal white adipose tissue (1)
Fruit body (1)
Blood (1)
Skin (1)
Colon (1)
Lung (1)
Blood plasma (1)
Kidney (1)
Cell culture (1)
Macrophage (1)

Disease

Acute kidney failure (1)
Inflammation (1)
Severe acute respiratory syndrome (1)
COVID-19 (1)
Cystic fibrosis (1)
Neuroblastoma (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (15)
Mass spectrometry (9)
Top-down proteomics (3)
Data-dependent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
SWATH MS (2)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina HiSeq 2000 (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina HiSeq 2500 (1)
Q Exactive HF (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2024 (9)
2022 (9)
2021 (9)
2025 (7)
2010 (6)
2014 (5)
2023 (4)
2007 (3)
2020 (3)
2019 (3)
2026 (2)
2012 (1)
2009 (1)
2008 (1)
2017 (1)

CHEBI ID

CHEBI:16610 (4)
CHEBI:42539 (3)
CHEBI:37550 (3)
CHEBI:17405 (3)
CHEBI:17697 (3)
CHEBI:15729 (3)
CHEBI:16958 (3)
CHEBI:17895 (3)
CHEBI:17368 (3)
CHEBI:17295 (3)
CHEBI:30769 (3)
CHEBI:17191 (3)
CHEBI:17509 (3)
CHEBI:16919 (3)
CHEBI:28281 (3)
CHEBI:27823 (3)
CHEBI:17596 (3)
CHEBI:18344 (3)
CHEBI:16335 (3)
CHEBI:137347 (2)
CHEBI:88098 (2)
CHEBI:39713 (2)
CHEBI:133145 (2)
CHEBI:86534 (2)
CHEBI:72999 (2)
CHEBI:82913 (2)
CHEBI:19229 (2)
CHEBI:28806 (2)
CHEBI:36751 (2)
CHEBI:15570 (2)

Metabolite Name

Spermidine (3)
Hypoxanthine (3)
Creatine (3)
Adenosine (3)
Inosine (3)
N-acetyl-DL-tryptophan (2)
Deoxyribose 5-phosphate (2)
2'-O-methylguanosine (2)
L-Ornithine (2)
Leucine (2)
Phenylacetic acid (2)
Valine (2)
Purine (2)
Stearic acid (2)
Docosahexaenoic acid (2)
Docosapentaenoic acid (2)
Eicosapentaenoic acid (2)
Kynurenic acid (2)
Propionylcarnitine (2)
Glycine (2)
Uracil (2)
Creatinine (2)
Urea (2)
L-Tyrosine (2)
Proline (2)
L-Isoleucine (2)
L-Fucose (2)
Palmitic acid (2)
Pantothenic acid (2)
L-Phenylalanine (2)

Study type

ChIP-chip by tiling array (9)
RNA-seq of coding RNA (4)
Transcription profiling by array (2)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (327)
2022 (257)
2023 (250)
2024 (230)
2021 (196)
2020 (129)
2019 (97)
2018 (82)
2017 (66)
2016 (57)
2015 (48)
2014 (46)
2026 (45)
2012 (19)
2013 (19)
2010 (11)
2011 (9)
2009 (4)
2007 (4)
2008 (2)
2006 (1)
2005 (1)
2000 (1)

Lab affiliation

State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Shanghai Diabetes Institute, Department of Endocrinology and Metabolism, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
Institute of Blood Transfusion, Chinese Academy of Medical Sciences & Peking Union Medical College, Chengdu, China, 610052 (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
JNU-HKUST Joint Laboratory for Neuroscience and Innovative Drug Research, College of Pharmacy, Jinan University, Guangzhou 510632, Guangdong, China. (1)
McGill University, department of physiology, Canada (1)
Department of Radiation Oncology, Univerisity of Pennsylvania (1)
1State Key Laboratory of Digital Medical Engineering, Department of Otolaryngology Head and Neck Surgery, Zhongda Hospital, School of Life Sciences and Technology, School of Medicine, Advanced Institute for Life and Health, Jiangsu Province High-Tech Key Laboratory for Bio-Medical Research, Southeast University, Nanjing 210096, China.2 Co-Innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China. (1)
Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China (1)
University of Cambridge, Department of Chemistry (1)
Department of Pathophysiology, School of Basic Medicine, Key Laboratory of Ministry of Education of China for Neurological Disorders, Tongji Medical College, Huazhong University of Science and Technology (1)
Fujian Agriculture and Forestry University (1)
Department of Urology,Zhongnan Hospital of Wuhan University,Wuhan 430071,China. Frontier Science Center for Immunology and Metabolism,Medical Research Institute,Wuhan University,Wuhan 430071,China. (1)
College of Animal Sciences, Zhejiang University,Hangzhou, China (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Regenerative Biology and Medicine, Munich, Germany, Member of the German Centre for Lung Research (DZL) (1)
School of Pharmaceutical Sciences, Wenzhou Medical University (1)
College of Life and Environmental Science, Hangzhou Normal University, Hangzhou 310036, China; Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou Normal University, Hangzhou 310036, China (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive Stanford, CA 94305-5175, USA (1)
Ocean University of China (1)
College of Pharmacy, Anhui University of Chinese Medicine, Hefei 230012, China (1)
Cell Biology Department, Harvard Medical School (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (lab head) (1)
Zhejiang University (1)

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First records of the fanged frogs Limnonectes bannaensis Ye, Fei & Jiang, 2007 and L. utara Matsui, Belabut & Ahmad, 2014 (Amphibia: Anura: Dicroglossidae) in Thailand.

Not available

S-EPMC8292287 | biostudies-literature

MicroRNAs in colorectal cancer as markers and targets: Recent advances.

Not available

S-EPMC3989964 | biostudies-literature

Transcriptomic and Metabolomic Insights into Key Genes Involved in Kinsenoside Biosynthesis in <i>Anoectochilus roxburghii</i>.

Not available

S-EPMC11902215 | biostudies-literature

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Metabolomics analyses of cancer tissue from patients with colorectal cancer.

The alteration of metabolism is essential for the initiation and progression of numerous types of cancer, including colorectal cancer (CRC). Metabolomics has been used to study CRC. At present, the reprogramming of the metabolism in CRC remains to be fully elucidated. In the present study, comprehen...

2024-02-08 | MTBLS8090 | MetaboLights

Cofactor Metabolic Engineering of Escherichia coli for Aerobic L-Malate Production with Lower CO₂ Emissions.

Not available

S-EPMC10451681 | biostudies-literature

Gut microbiota production of trimethyl-5-aminovaleric acid reduces fatty acid oxidation and accelerates cardiac hypertrophy

Numerous studies found intestinal microbiota alterations which are thought to affect the development of various diseases through the production of gut-derived metabolites. However, the specific metabolites and their pathophysiological contribution to cardiac hypertrophy or heart failure progression ...

2021-12-08 | MTBLS3174 | MetaboLights

Intestinal Microbiota Differences in Litopenaeus vannamei Shrimp between Greenhouse and Aquaponic Rearing.

Not available

S-EPMC9965531 | biostudies-literature

AANL (Agrocybe aegerita lectin 2) is a new facile tool to probe for O-GlcNAcylation.

Not available

S-EPMC6454498 | biostudies-literature

Intense androgen-deprivation therapy with abiraterone acetate plus leuprolide acetate in patients with localized high-risk prostate cancer: results of a randomized phase II neoadjuvant study.

Not available

S-EPMC4226804 | biostudies-literature