Ye M M - OmicsDI

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Unknown (11046)
Proteomics (438)
Transcriptomics (256)
Genomics (102)
Metabolomics (53)
Models (2)

Organisms

Homo sapiens (397)
Mus musculus (160)
Schizosaccharomyces pombe (33)
Bombyx mori (12)
Arabidopsis thaliana (11)
Rattus norvegicus (10)
Daphnia pulex (9)
Oryza sativa (8)
Saccharomyces cerevisiae (7)
Drosophila melanogaster (5)
Schizosaccharomyces pombe 972h- (4)
Camponotus floridanus (3)
Ovis aries (3)
Bursaphelenchus xylophilus (2)
Apostichopus japonicus (2)
Streptococcus suis (2)
Vitis vinifera (2)
Aedes aegypti (2)
Oryza sativa Japonica Group (2)
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Sus scrofa (2)
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Bos grunniens (1)
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unidentified microorganism (1)
Harpegnathos saltator (1)
Pyropia yezoensis (1)

Organisms

Metallosphaera sedula (1)
Homo sapiens (1)
Mus musculus (1)

Repository

pride (336)
biostudies-arrayexpress (324)
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Tissue

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Disease

Disease free (12)
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Diffuse large B-cell lymphoma activated B-cell type (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)

Technology Type

Mass Spectrometry (336)
Shotgun proteomics (188)
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Instrument Platform

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NA (1)
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Publication Date

2024 (72)
2022 (72)
2025 (67)
2026 (64)
2023 (63)
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2014 (54)
2015 (46)
2012 (44)
2010 (41)
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2018 (18)
2007 (14)
2008 (12)
2009 (9)
2004 (8)
2005 (3)
2003 (1)

UNIPROT ID/AC

A0A024RC46 (3)
A0A0A0MR66 (3)
A0A0A0MSA7 (3)
A0A0C4DG89 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A5A3E0 (3)
B1AKZ5 (3)
B4DHB3 (3)
B4DKM5 (3)
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B9VP19 (3)
E7EVA0 (3)
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H0YM50 (3)
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I3L4N8 (3)
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J3KPS3 (3)
L0R849 (3)
O00410 (3)
O00499 (3)
O14639 (3)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:17368 (12)
CHEBI:17596 (12)
CHEBI:16704 (11)
CHEBI:17895 (11)
CHEBI:15428 (10)
CHEBI:16919 (10)
CHEBI:15354 (9)
CHEBI:16449 (9)
CHEBI:16467 (9)
CHEBI:16811 (9)
CHEBI:17295 (9)
CHEBI:17405 (9)
CHEBI:17568 (9)
CHEBI:18186 (9)
CHEBI:30769 (9)
CHEBI:15741 (8)
CHEBI:15843 (8)
CHEBI:15971 (8)
CHEBI:16828 (8)
CHEBI:18237 (8)
CHEBI:18344 (8)
CHEBI:24898 (8)
CHEBI:27266 (8)
CHEBI:27823 (8)
CHEBI:28044 (8)
CHEBI:10072 (7)
CHEBI:15756 (7)
CHEBI:16020 (7)
CHEBI:16335 (7)
CHEBI:16411 (7)

Metabolite Name

Creatine (12)
Hypoxanthine (12)
Choline (11)
Inosine (10)
Proline (10)
Uracil (10)
Valine (10)
Adenosine (8)
Glycine (8)
L-Glutamine (8)
Methionine (8)
Taurine (8)
Thiamine (8)
Uridine (8)
4-Pyridoxic acid (7)
Adenine (7)
Arachidonic acid (7)
Betaine (7)
Creatinine (7)
Docosahexaenoic acid (7)
Eicosapentaenoic acid (7)
Isoleucine (7)
L-Arginine (7)
L-Histidine (7)
L-Ornithine (7)
L-Tyrosine (7)
Riboflavin (7)
Taurocholic acid (7)
Uric acid (7)
Xanthosine (7)

First Public Date

2024 (1)
2020 (1)
2018 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
Dalian Institute of Chemical Physics, CAS (4)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (3)
Fondazione Ri.MED (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
Zhejiang University (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian 116023, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (2)
Copenhagen Center for Glycomics, University of Copenhagen (2)
Department of Cellular and Molecular Medicine, University of Copenhagen (2)
Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 627-706, South Korea (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (2)
Fujian Agriculture and Forestry University (2)
Huazhong Agricultural University (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Jinan University (2)
Nanjing Agricultural University (2)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (2)
Professor, Department of Cellular and Molecular Pharmacology (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
School of Pharmacy, UW-Madison (2)
Sencond Military Medical University (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)

IsPrivate

False (2)

Study type

Transcription profiling by array (128)
ChIP-seq (51)
RNA-seq of coding RNA (49)
ChIP-chip by tiling array (17)
RNA-seq of non coding RNA (12)
Methylation profiling by high throughput sequencing (11)
Transcription profiling by tiling array (6)
ChIP-chip by array (6)
Comparative genomic hybridization by array (6)
Other (6)
DNA-seq (5)
Methylation profiling by array (5)
RIP-chip by array (4)
Unknown experiment type (3)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Two-color microarray (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Translation profiling (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
RIP-seq (1)

Release Date

2025 (1677)
2022 (1465)
2023 (1327)
2024 (1292)
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2020 (878)
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2017 (441)
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2026 (244)
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2011 (129)
2010 (112)
2009 (69)
2007 (45)
2008 (41)
2004 (16)
2006 (13)
2005 (12)
2003 (6)
2000 (5)
2001 (4)
2002 (2)
1999 (2)
1998 (1)

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Transcriptional Response of 0.1%YE-grown M. sedula cells to ferrous sulfate

(from abstract): Iron oxidation is a desirable trait of biomining microorganisms, although the mechanism is not well-understood in extreme thermoacidophiles. The complete genome sequence of the extremely thermoacidophilic archaeon Metallosphaera sedula DSM 5348 (2.2 Mb, ~2300 ORFs) provides insights...

ORGANISM(S): Metallosphaera sedula

2008-05-02 | E-GEOD-11296 | biostudies-arrayexpress

Transcriptional Response of 0.1%YE-grown M. sedula cells to ferrous sulfate

ORGANISM(S): Metallosphaera sedula

2008-05-02 | GSE11296 | GEO

Transcription profiling of mouse mammary tumour samples derived from our MMTV/neundl-NYPD, -YB, -YC, -YD, -YE and the parental MMTV/neu NDL2-5 strains

ErbB-2 overexpression and amplification occurs in 15 - 30% of human invasive breast carcinomas associated with poor clinical prognosis. Previously, we have demonstrated that four ErbB-2/Neu tyrosine-autophosphorylation sites within the cytoplasmic tail of the receptor recruit distinct adaptor pro...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-7595 | biostudies-arrayexpress

Metallosphaera sedula

Transcriptional Response of 0.1%YE-grown M. sedula cells to ferrous sulfate

PRJNA106717 | ENA

Structural and functional characterization of the N-terminus of Schizosaccharomyces pombe Cwf10

The spliceosome is a dynamic macromolecular machine that catalyzes the removal of introns from pre-mRNA to make mature message. Schizosaccharomyces pombe Cwf10 (homolog Saccharomyces cerevisiae Snu114 and of Human U5-116K), an integral member of the U5 snRNP, is a GTPase that shares sequence homolog...

ORGANISM(S): Schizosaccharomyces pombe

2013-09-25 | E-GEOD-47573 | biostudies-arrayexpress

Serum protein N-glycosylation changes in multiple myeloma