Ye Ran R - OmicsDI

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Unknown (40)
Proteomics (8)
Transcriptomics (6)
Genomics (2)
Metabolomics (1)

Organisms

Homo sapiens (10)
Mus musculus (4)
Mus sp. (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (7)
iProX (6)
EGA (1)
jPOST (1)
MetaboLights (1)
pride (1)

Tissue

B cell (1)

Disease

Mantle cell lymphoma (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)

Technology Type

Mass spectrometry assay (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Illumina MiSeq (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2023 (4)
2026 (2)
2010 (2)
2022 (2)
2021 (2)
2020 (1)
2013 (1)
2011 (1)
2007 (1)

CHEBI ID

CHEBI:145571 (1)

Metabolite Name

(+)-WIN 55,212-2 (1)
(+/-)-C75 (1)
(+/-)-Gingerol (1)
(+/-)12(13)-DiHOME (1)
(+/-)12-HpETE (1)
(+/-)13-HODE (1)
(+/-)18-HEPE (1)
(+/-)19(20)-DiHDPA (1)
(+/-)8(9)-DiHET (1)
(+/-)9,10-dihydroxy-12Z-octadecenoic acid (1)
(-)-Camphanic acid (1)
(15Z)-9,12,13-Trihydroxy-15-octadecenoic acid (1)
(1S,6R,11aR,13R,14aS)-1,13-dihydroxy-6-methyl-1H,4H,6H,7H,8H,9H,11aH,12H,13H,14H,14aH-cyclopenta[f]oxacyclotridecan-4-one (1)
(2E)-3-(4-Acetoxy-2,3-dihydroxy-2,5,5,8a-tetramethyldecahydro-1-naphthalenyl)acrylic acid (1)
(2E)-3-(Acetoxymethyl)-5-[(1S,4aR,8aR)-2-(hydroxymethyl)-5,5,8a-trimethyl-1,4,4a,5,6,7,8,8a-octahydro-1-naphthalenyl]-2-pentenoic acid (1)
(2E)-5-[(8aS)-2,5,5,8a-tetramethyl-3-oxo-3,4,4a,5,6,7,8,8a-octahydronaphthalen-1-yl]-3-methylpent-2-enoic acid (1)
(2E,4E)-N-(2-methylpropyl)dodeca-2,4-dienamide (1)
(2R)-2,3-Dihydroxypropanoic acid (1)
(2S)-N-[(2S)-1-Amino-3-cyclohexyl-1-oxo-2-propanyl]-1-(cyclohexylcarbonyl)-4-[4-(dimethylamino)benzoyl]-2-piperazinecarboxamide (1)
(2S,3R,4S,5S,6R)-2-{[(2S)-2-[(2R,5S,8S,10R,11R,14S,15R,16R)-8-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}oxan-2-yl]oxy}-5,16-dihydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0??,?¡?0?a?a,?a??]heptadecan-14-yl]-6-methylhept-5-en-2-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (1)
(2S,3S)-8-[(2R,3S)-5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-1-benzopyran-3-yl]-3,5,7-trihydroxy-2-(4-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one (1)
(2S,5aS,8aR)-1-Methyl-6-(4-methylbenzyl)-2-[3-(4-morpholinyl)-3-oxopropyl]octahydropyrrolo[3,2-E][1,4]diazepin-5(2H)-one (1)
(2S,5aS,8aR)-6-(4-Methoxybenzyl)-1-methyl-2-[3-(4-morpholinyl)-3-oxopropyl]octahydropyrrolo[3,2-E][1,4]diazepin-5(2H)-one (1)
(2Z)-2-Octyl-2-pentenedioic acid (1)
(2Z)-5-(1,2,4a,5-tetramethyl-7-oxo-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl)-3-methylpent-2-enoic acid (1)
(3E,6R)-6-hydroxy-6-[(1R,2R,4S,10S,11S,13R,15R)-13-hydroxy-1,6,6,11,15-pentamethyl-5,17-dioxo-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0??,?¡?0?a?a,?a??]heptadec-7-en-14-yl]-2-methyl-5-oxohept-3-en-2-yl acetate (1)
(3R,5S)-1-(1H-Imidazol-2-ylmethyl)-5-[3-(3-nitrophenyl)-1,2,4-oxadiazol-5-yl]-3-pyrrolidinol (1)
(3R,5S)-1-Isopropyl-5-[3-(3-pyridinyl)-1,2,4-oxadiazol-5-yl]-3-pyrrolidinol (1)
(3beta,5xi,6alpha,9xi,12beta)-20-(beta-D-Glucopyranosyloxy)-3,12-dihydroxydammar-24-en-6-yl beta-D-glucopyranoside (1)
(3beta,8xi,9xi,12beta,14beta)-11,12,14-Trihydroxy-20-oxopregn-5-en-3-yl 6-deoxyhexopyranosyl-(1-4)-2,6-dideoxy-3-O-methylhexopyranosyl-(1-4)-2,6-dideoxy-3-O-methylhexopyranoside (1)

Study type

Transcription profiling by array (5)
Cell line - One-color microarray (1)
DNA-seq (1)

Release Date

2025 (7)
2023 (7)
2022 (7)
2020 (4)
2024 (4)
2021 (4)
2026 (2)
2010 (2)
2016 (2)
2013 (1)
2011 (1)
2007 (1)
2019 (1)
2018 (1)
2017 (1)
2005 (1)
2004 (1)

Lab affiliation

Division of Immune Diversity (D150), German Cancer Research Center (DKFZ), Heidelberg, Germany. (1)

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Compare RNA profile between LPS+CPN and LPS+CPN+GGOH treated peritoneal macrophages

To find out genes regulated by geranylgeraniol (GGOH) treatment in peritoneal macrophage, we compared gene expression of cells treated with 200ng ml LPS and 250 micromolar compactin versus 200ng ml LPS, 250 micromolar compactin and 100micromolar GGOH. To find out upregulated or downregulated genes r...

ORGANISM(S): Mus musculus

2013-11-12 | E-GEOD-48646 | biostudies-arrayexpress

Differential Expression of NF-kB target genes in MALT lymphoma with and without chromosome translocation

MALT lymphoma is characterized by t(11;18)(q21;q21)/API2-MALT1, t(1;14)(p22;q32)/BCL10-IGH and t(14;18)(q32;q21)/IGH-MALT1, which commonly activate the NF-κB pathway. Gastric MALT lymphomas harboring such translocation do not respond to H. pylori eradication, while those without translocation can be...

ORGANISM(S): Homo sapiens

2010-05-31 | E-GEOD-18736 | biostudies-arrayexpress

Mass spectrometry analysis of FLAG-5MP complexes

FLAG-tagged 5MP (h5MP1/BZW2 from human and 5MP/Kra from fly) was ectopically expressed in relevant host cells (HEK293T for human and S2 for fly) by transient transfection, and one-step affinity-purified by anti-FLAG affinity resin.The one-step affinity purification products were resolved by SDS-PAGE...

ORGANISM(S): Drosophila Melanogaster (fruit Fly)

2021-05-27 | PXD026284 | JPOST Repository

Identification of molecular mechanisms involved in pathogenesis of MALT lymphoma from small sample size

MALT lymphoma is characterized by t(11;18)(q21;q21)/API2-MALT1, t(1;14)(p22;q32)/BCL10-IGH and t(14;18)(q32;q21)/IGH-MALT1, which commonly activate the NF-ÎºB pathway. Gastric MALT lymphomas harboring such translocation do not respond to H. pylori eradication, while those without translocation can b...

ORGANISM(S): Homo sapiens

2010-10-07 | E-GEOD-16024 | biostudies-arrayexpress

Temporal Dynamics and Genetic Control of Transcription in the Human Prefrontal Cortex

In order to gain a global molecular perspective on how the human genome gives rise to the brain, we explore the temporal dynamics and genetic control of transcription in human dorsolateral prefrontal cortex in an extensive series of brain tissue from fetal development through aging. We discover a wa...

ORGANISM(S): Homo sapiens

2011-10-26 | E-GEOD-30272 | biostudies-arrayexpress

Temporal dynamics of total and active root-associated diazotrophic communities in field-grown rice.

Not available

S-EPMC9606772 | biostudies-literature

Nanoarchitectonics of tannic acid based injectable hydrogel regulate the microglial phenotype to enhance neuroplasticity for poststroke rehabilitation.

Not available

S-EPMC10617113 | biostudies-literature

BrainCloud: Data from human postmortem brain procurement for the neuropathology section

This study explores the temporal dynamics and genetic control of transcription and DNA methylation in the human dorsolateral prefrontal cortex in postmortem tissue. This study examines 269 subjects for gene expression (version 1) and 108 subjects for DNA methylation (version 2). The subjects are ...

phs000417.v2.p1 | EGA

The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.

Not available

S-EPMC4926322 | biostudies-literature

Identification of Prognostic and Chemopredictive microRNAs for Non-Small-Cell Lung Cancer by Integrating SEER-Medicare Data.

Not available

S-EPMC8306800 | biostudies-literature