Ye Yang Y - OmicsDI

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Unknown (4523)
Proteomics (142)
Transcriptomics (35)
Metabolomics (17)
Genomics (10)

Organisms

Homo sapiens (65)
Mus musculus (20)
Rattus norvegicus (4)
Ovis aries (3)
Triticum aestivum (2)
Drosophila melanogaster (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Bos grunniens (1)
Camponotus floridanus (1)
Harpegnathos saltator (1)
Bombyx mori (1)
Callithrix jacchus (1)
Macaca mulatta (1)
Oryza sativa Indica Group (1)
Streptomyces coelicolor (1)
Schizosaccharomyces pombe (1)
Pseudomonas aeruginosa (1)
Arabidopsis thaliana (1)
Caenorhabditis elegans (1)
Camellia oleifera (1)
Cancer (1)
Escherichia coli (1)
Escherichia coli K-12 (1)
Macaca fascicularis fascicularis (1)
Medicago truncatula (1)
Mycolicibacterium smegmatis MC2 51 (1)
Pachycrepoideus vindemmiae (1)
Triticum aestivum subsp. tibeticum (1)
Vibrio parahaemolyticus RIMD 2210633 (1)
Zea mays (1)

Repository

iProX (71)
pride (67)
biostudies-arrayexpress (39)
MetaboLights (17)
EGA (6)
MassIVE (2)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (13)
Blood (7)
Epithelial cell (7)
Root (4)
Whole body (4)
Blood cell (3)
Brain (3)
Bone marrow (2)
Leaf (2)
Lung (2)
Plant cell (2)
Primary cell (2)
Testis (2)
Blood plasma (1)
Colon (1)
Diploid cell (1)
Embryo (1)
Embryonic stem cell (1)
Epididymal white adipose tissue (1)
Flower (1)
HEK-293 cell (1)
Heart (1)
HiPSC cell (1)
Lens (1)
Macrophage (1)
Monocyte (1)
Multiple myeloma cell line (1)
Permanent cell line cell (1)
Plasma cell (1)
Regional part of brain (1)

Disease

Disease free (5)
Acute leukemia (1)
Breast cancer (1)
COVID-19 (1)
Cataract (1)
Cervical cancer (1)
Colon cancer (1)
Gastric adenocarcinoma (1)
IgA glomerulonephritis (1)
Lung cancer (1)
Multiple myeloma (1)
Severe acute respiratory syndrome (1)
Stomach carcinoma (1)
Type 2 diabetes mellitus (1)
Uveitis (1)

Technology Type

Mass Spectrometry (67)
Shotgun proteomics (32)
Mass spectrometry (15)
Bottom-up proteomics (10)
Top-down proteomics (8)
Data-dependent acquisition (7)
Gel-based experiment (6)
Data-independent acquisition (4)
NMR spectroscopy (2)
Affinity purification coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (8)
Gas Chromatography MS - (3)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Bruker (1)
Xevo G2 QTOF (Waters) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (28)
2022 (25)
2023 (23)
2021 (22)
2024 (18)
2026 (13)
2019 (13)
2010 (12)
2014 (9)
2020 (6)
2015 (5)
2012 (4)
2018 (4)
2016 (4)
2013 (3)
2007 (3)
2017 (3)
2011 (1)
2009 (1)
2008 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

CHEBI ID

CHEBI:15354 (7)
CHEBI:17596 (7)
CHEBI:16704 (6)
CHEBI:17368 (6)
CHEBI:18132 (5)
CHEBI:18186 (5)
CHEBI:16449 (5)
CHEBI:15843 (5)
CHEBI:55328 (5)
CHEBI:32816 (5)
CHEBI:17895 (5)
CHEBI:17351 (5)
CHEBI:30769 (5)
CHEBI:28918 (4)
CHEBI:67252 (4)
CHEBI:18292 (4)
CHEBI:16390 (4)
CHEBI:15765 (4)
CHEBI:18237 (4)
CHEBI:16811 (4)
CHEBI:17533 (4)
CHEBI:16750 (4)
CHEBI:28875 (4)
CHEBI:41865 (4)
CHEBI:16393 (4)
CHEBI:27823 (4)
CHEBI:16335 (4)
CHEBI:17568 (4)
CHEBI:27266 (4)
CHEBI:17650 (4)

Metabolite Name

Choline (6)
Hypoxanthine (6)
Uracil (4)
Valine (4)
Betaine (4)
Arachidonic acid (4)
Adenosine (4)
Creatine (4)
Inosine (4)
Leucine (3)
Sphingosine (3)
3,4,5-Trimethoxycinnamic acid (3)
L-Arginine (3)
Phosphocholine (3)
Palmitoleic acid (3)
Cotinine (3)
Methionine (3)
Taurine (3)
Taurocholic acid (3)
Docosahexaenoic acid (3)
Cytosine (3)
Alanine (3)
Proline (3)
Palmitic acid (3)
Isoleucine (3)
Uridine (3)
Trehalose (3)
Creatinine (3)
3-Hydroxybutyrate (2)
3beta-(3-methyl-butanoyloxy)-villanovane-13alpha,17-diol (2)

Study type

Transcription profiling by array (11)
ChIP-chip by tiling array (9)
RNA-seq of coding RNA (8)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Comparative genomic hybridization by array (2)
Transcription profiling by tiling array (1)
ChIP-seq (1)
Methylation profiling by array (1)

Release Date

2025 (762)
2022 (648)
2023 (595)
2024 (544)
2021 (497)
2020 (352)
2019 (198)
2018 (175)
2017 (138)
2016 (137)
2015 (129)
2026 (125)
2014 (94)
2012 (40)
2013 (39)
2010 (28)
2011 (27)
2009 (11)
2008 (8)
2007 (5)
2003 (3)
2006 (2)
2005 (2)
2004 (1)
2002 (1)
1999 (1)

Lab affiliation

1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
Sencond Military Medical University (2)
Shenzhen Hospital of Southern Medical University (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
USDA-ARS (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
Advanced Mass Spectrometry Center, Research Core Facility, Frontiers Scienc Center for Disease-Related Molecular Network, West China Hospital (1)
Affiliated Hospital of Qinghai University, Qinghai , China (1)
Bone Marrow Transplantation Center, Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China (1)
Cell Biology Department, Harvard Medical School (1)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (1)
College of Animal Science and Technology, China Agricultural University.College of Animal Science and Technology, China Agricultural University. (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Biological Sciences, Korea Advanced Institute for Science and Technology (KAIST), Korea (1)
Department of Gastrointestinal Surgery, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen (1)
Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China; Cancer Center of Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China (1)
Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)
Department of Molecular Immunology, Institute of Basic Medical Sciences (1)
Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center (1)
Department of Nephrology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China;Guangdong-Hong Kong Joint Laboratory on Immunological and Genetic Kidney Diseases; Guangzhou, China. (1)
Department of Pathology and Cancer Center, Stony Brook University, Stony Brook, NY 11794 (1)
Department of Pathophysiology, School of Basic Medicine, Key Laboratory of Ministry of Education of China for Neurological Disorders, Tongji Medical College, Huazhong University of Science and Technology (1)
Department of Radiation Oncology, Univerisity of Pennsylvania (1)
Eye Hospital of Wenzhou Medical University at Hangzhou, 618 East Fengqi Road, Hangzhou (1)

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Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Expression of Yin Yang 1 in cervical cancer and its correlation with E-cadherin expression and HPV16 E6.

Not available

S-EPMC5823405 | biostudies-literature

Self-derived structure-disrupting peptides targeting methionine aminopeptidase in pathogenic bacteria: a new strategy to generate antimicrobial peptides.

Not available

S-EPMC6338635 | biostudies-literature

Quantitative high-throughput screening identifies cytoprotective molecules that enhance SUMO conjugation via the inhibition of SUMO-specific protease (SENP)2.

Not available

S-EPMC5892725 | biostudies-literature

Integrative metabolic and microbial profiling on patients with Spleen-yang-deficiency syndrome.

Not available