Ye Zhou Z - OmicsDI

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Unknown (2326)
Proteomics (85)
Transcriptomics (11)
Metabolomics (8)
Genomics (1)

Organisms

Homo sapiens (48)
Mus musculus (23)
Solanum lycopersicum (4)
Oryza sativa (3)
Panicum virgatum (3)
Severe acute respiratory syndrome coronavirus 2 (2)
Bos grunniens (1)
Macaca mulatta (1)
Malus domestica (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Bos taurus (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Staphylococcus aureus (1)
Bat coronavirus RaTG13 (1)
Camellia nitidissima (1)
Camellia sinensis (1)
Deinococcus radiodurans (1)
Lathyrus oleraceus (1)
Pseudomonas aeruginosa PAO1 (1)
Saccharopolyspora erythraea NRRL 2338 (1)
Sarbecovirus (1)
Sipunculus nudus (1)
Solanum tuberosum (1)
Streptococcus suis 05ZYH33 (1)
Streptomyces coelicolor (1)

Repository

pride (60)
iProX (22)
biostudies-arrayexpress (12)
MetaboLights (8)
jPOST (2)
MassIVE (1)

Tissue

Cell culture (10)
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Brain (2)
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Anterior chamber of the eye (1)
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Cell suspension culture (1)
Embryo (1)
Epididymal white adipose tissue (1)
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Disease

Breast cancer (4)
Disease free (2)
Acute leukemia (1)
Bacterial infectious disease (1)
COVID-19 (1)
Cardiovascular system disease (1)
Inflammation (1)
Myopia (1)
Severe acute respiratory syndrome (1)
Stomach carcinoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (25)
Bottom-up proteomics (12)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (7)
Gel-based experiment (6)
Top-down proteomics (6)
Data-dependent acquisition (4)
Data-independent acquisition (2)
SWATH MS (2)
Immunopeptidomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Gas Chromatography MS - (2)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina HiSeq 2000 (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters) (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)

Publication Date

2025 (21)
2024 (14)
2022 (11)
2026 (10)
2021 (9)
2023 (9)
2016 (7)
2017 (4)
2019 (4)
2020 (4)
2015 (3)
2018 (3)
2014 (2)
2012 (2)
2013 (1)
2010 (1)

CHEBI ID

CHEBI:17351 (4)
CHEBI:30769 (4)
CHEBI:10072 (3)
CHEBI:15318 (3)
CHEBI:15354 (3)
CHEBI:15551 (3)
CHEBI:15756 (3)
CHEBI:15765 (3)
CHEBI:15843 (3)
CHEBI:15891 (3)
CHEBI:16196 (3)
CHEBI:16296 (3)
CHEBI:16335 (3)
CHEBI:16347 (3)
CHEBI:16450 (3)
CHEBI:16467 (3)
CHEBI:16610 (3)
CHEBI:16704 (3)
CHEBI:16750 (3)
CHEBI:16927 (3)
CHEBI:16995 (3)
CHEBI:17295 (3)
CHEBI:17311 (3)
CHEBI:17368 (3)
CHEBI:17405 (3)
CHEBI:17533 (3)
CHEBI:17596 (3)
CHEBI:17650 (3)
CHEBI:17687 (3)
CHEBI:17859 (3)

Metabolite Name

Adenosine (3)
Arachidonic acid (3)
Hypoxanthine (3)
Taurocholic acid (3)
21-Deoxycortisol (2)
3,4,5-Trimethoxycinnamic acid (2)
3-Methylindole (2)
4-Pyridoxic acid (2)
Acetylcholine (2)
Adenine (2)
Amoxicillin (2)
Argininosuccinic acid (2)
Benzoic acid (2)
Betamethasone (2)
Biopterin (2)
Cefazolin (2)
Choline (2)
Citric acid (2)
Colchicine (2)
Cortisol (2)
Cotinine (2)
Creatine (2)
Cytosine (2)
Dimethylallyl pyrophosphate (2)
Diosgenin (2)
Docosahexaenoic acid (2)
Eicosapentaenoic acid (2)
Glycochenodeoxycholic acid (2)
Guanine (2)
Guanosine (2)

Study type

RNA-seq of coding RNA (5)
Transcription profiling by array (3)
Animal - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (416)
2023 (332)
2024 (323)
2022 (305)
2021 (245)
2020 (171)
2019 (99)
2018 (90)
2017 (74)
2026 (59)
2015 (57)
2016 (53)
2014 (39)
2013 (21)
2012 (21)
2011 (13)
2010 (7)
2009 (4)
2007 (2)
2000 (2)
2008 (1)
2006 (1)
2005 (1)
2004 (1)
2003 (1)

Lab affiliation

USDA-ARS (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
University of Science and Technology of China (2)
Zhejiang University (2)
Ben May department of cancer research, The university of Chicago (1)
Biomolecular Mass Spectrometry and Proteomics Utrecht University The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
College of Architecture and Urban Planning, Fujian University of Technology (1)
College of Pharmacy, Jinan University, Guangzhou 510632, P. R. China (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
Department of Cardiovascular Surgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China (1)
Department of Dermatology, Xinhua Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China (1)
Department of Gastrointestinal Surgery, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen (1)
Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)
Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center (1)
Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200080, China. (1)
Department of Radiation Oncology, Nanfang Hospital, Southern Medical University (1)
Fujian Agriculture and Forestry University (1)
Guangzhou National Laboratory, Guangzhou International Bio-Island, Guangzhou 510000, China (1)
HHubei Academy of Agricultural Sciences, Wuhan, China ubei Academy of Agricultural Sciences, Wuhan, China (1)
Hong Kong Baptist University (1)
Hu Bei province,enshi Acandemy of Agricutural sciences (1)
Institutes of Biology and Medical Sciences, Soochow University, Suzhou, People's Republic of China (1)
Jinan University (1)
Key Laboratory of Chinese Ministry of Agriculture for Nuclear-Agricultural Sciences, Institute of Nuclear-Agricultural Sciences, Zhejiang University, China (1)
Lab of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China. (1)

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Self-derived structure-disrupting peptides targeting methionine aminopeptidase in pathogenic bacteria: a new strategy to generate antimicrobial peptides.

Not available

S-EPMC6338635 | biostudies-literature

(Z)-1,4-Diphenyl-but-1-en-3-ynyl acetate.

Not available

S-EPMC3470207 | biostudies-literature

SARS-CoV-2 Z-RNA activates the ZBP1-RIPK3 pathway to promote virus-induced inflammatory responses.

Not available

S-EPMC9844202 | biostudies-literature

Identification of the role of autophagy-related TNFSF10/ hsa-let-7a-5p axis in vitiligo development and potential herbs exploring based on a bioinformatics analysis.

Not available

S-EPMC10750083 | biostudies-literature

Construction of Z-scheme NiO/NiC/g-C₃N₄ composites using NiC as novel cocatalysts for the efficient photocatalytic degradation.

Not available

S-EPMC9036862 | biostudies-literature

Gene expression data from LCMV-specific WT and Tcf7-/- follicular T helper cells

We did microarray experiments to elucidate the transcriptome changes due to TCF-1 deficiency in Tfh cells. These data clearly demonstrate that Tfh-associated genes were down-regulated in TCF-1-null Tfh cells, whereas Th1-associated signatures were up-regulated, indicating that TCF-1 initiates the Tf...

ORGANISM(S): Mus musculus

2015-07-24 | E-GEOD-65693 | biostudies-arrayexpress

Immunocompatible Elastomer with increased resistance to the foreign body response

Polymeric elastomers are extensively employed to fabricate implants intended for prolonged implantation. However, implantation of the elastomers can induce strong immune rejection reaction known as foreign body response (FBR), resulting in the rejection of foreign implants and thereby diminishing th...

ORGANISM(S): Mus musculus (Mouse)

2024-10-17 | PXD054629 | Pride

Foreign body response

Camellia nitidissima patal LC-MSMS

Camellia nitidissima is renowned for its distinctive golden-colored flowers and serves as a valuable resource for cultivating various yellow camellia varieties. we employed the Tandem Mass Tag (TMT) to construct a proteome map of C. nitidissima petals at five different developmental stages. As a res...

ORGANISM(S): Camellia nitidissima

2024-10-19 | PXD042944 | Pride

Lc-msms Camellia nitidissima Tandem mass tag (tmt) Patal

Identification of chemotypes in bitter melon by metabolomics: a plant with potential benefit for management of diabetes in traditional Chinese medicine

INTRODUCTION: Bitter melon (Momordica charantia, Cucurbitaceae) is a popular edible medicinal plant, which has been used as a botanical dietary supplement for the treatment of diabetes and obesity in Chinese folk medicine. Previously, our team has proved that cucurbitanes triterp...

2019-10-24 | MTBLS701 | MetaboLights

Contralateral Suppression at Adrenal Venous Sampling Is Associated with Renal Impairment Following Adrenalectomy for Unilateral Primary Aldosteronism (Endocrinol Metab 2021;36:875-84, Ye Seul Yang et al.).

Not available

S-EPMC9816511 | biostudies-literature

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