Yin Di D - OmicsDI

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Transcriptomics (251)
Unknown (164)
Genomics (18)
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Organisms

Homo sapiens (89)
Mus musculus (50)
Saccharomyces cerevisiae (15)
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Oryza sativa Japonica Group (2)
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Arabidopsis thaliana (2)
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Repository

biostudies-arrayexpress (269)
MassIVE (8)
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pride (1)

Tissue

Heart (1)

Disease

EAE-resistant (1)
Glioma (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
Xenografts with H1299 cell line (1)
Colon cancer metastasis (1)
Resistant (1)
Breast carcinoma (1)
Cardiovascular system disease (1)

Technology Type

Mass spectrometry (2)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (6)
NextSeq 500 (5)
Q Exactive Plus (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (3)
G2500A GeneArray scanner [Agilent Technologies] (2)
GenePix Professional 4200A [Axon Instruments] (2)
Other (2)
GenePix 4000B [Axon Instruments] (2)
Illumina MiSeq (2)
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Liquid Chromatography MS - positive - reverse phase (2)
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Dionex UltiMate 3000 Rapid Separation nanoLC coupled to the Orbitrap Elite Mass Spectrometer (1)
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Publication Date

2010 (43)
2013 (34)
2014 (30)
2012 (30)
2011 (26)
2015 (21)
2008 (14)
2007 (13)
2009 (11)
2016 (10)
2020 (6)
2025 (5)
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2021 (5)
2018 (5)
2006 (5)
2005 (5)
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2026 (3)
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2019 (1)

CHEBI ID

CHEBI:133077 (1)
CHEBI:133086 (1)
CHEBI:138564 (1)
CHEBI:141500 (1)
CHEBI:16496 (1)
CHEBI:165451 (1)
CHEBI:168398 (1)
CHEBI:168736 (1)
CHEBI:169837 (1)
CHEBI:174842 (1)
CHEBI:175585 (1)
CHEBI:177942 (1)
CHEBI:17823 (1)
CHEBI:17833 (1)
CHEBI:178691 (1)
CHEBI:180632 (1)
CHEBI:180633 (1)
CHEBI:180634 (1)
CHEBI:180635 (1)
CHEBI:180636 (1)
CHEBI:180637 (1)
CHEBI:180638 (1)
CHEBI:180639 (1)
CHEBI:180640 (1)
CHEBI:180641 (1)
CHEBI:180642 (1)
CHEBI:180643 (1)
CHEBI:180644 (1)
CHEBI:32173 (1)
CHEBI:38225 (1)

Metabolite Name

(3beta,5alpha,6beta,24R)-Stigmastane-3,5,6-triol (1)
12,14-Pentacosadiynoic acid (1)
5-b-Cholestane-3a ,7a ,12a-triol (1)
Calcitriol (1)
Octadecanedioic acid (1)
PI(18:2(9Z,12Z)/0:0) (1)
PI(18:3(9Z,12Z,15Z)/0:0) (1)
PI(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/0:0) (1)
SUXIBUZONE (1)
Zanthobisquinolone (1)

Study type

Transcription profiling by array (172)
RNA-seq of coding RNA (24)
Transcription profiling by RT-PCR (17)
ChIP-seq (12)
Other (9)
Unknown experiment type (6)
High-throughput sequencing (4)
Comparative genomic hybridization by array (3)
RNA-seq of non coding RNA (3)
Transcription profiling by tiling array (2)
Transcription profiling by SAGE (1)
Baseline (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
ATAC-seq (1)
Hi-C (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2010 (44)
2014 (38)
2013 (37)
2012 (33)
2011 (29)
2015 (27)
2025 (26)
2024 (25)
2022 (23)
2023 (21)
2021 (21)
2016 (16)
2008 (15)
2007 (13)
2009 (12)
2020 (11)
2018 (10)
2017 (10)
2019 (8)
2006 (5)
2005 (5)
2026 (4)

Lab affiliation

Vascular Biology Section, Boston University School of Medicine, Boston, MA (1)

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Expression data from mouse skeletal muscle

We generated skeletal muscle-specific knockout mice lacking the transcription factor Yin Yang 1 (YY1) and analyzed expression patterns in the skeletal muscle these mice. We used microarrays to detail the global programme of gene expression regulated by YY1. Wild type or knockout mice at 6 months wer...

ORGANISM(S): Mus musculus

2012-06-29 | E-GEOD-39009 | biostudies-arrayexpress

D-DI/PLT can be a prognostic indicator for sepsis.

Not available

S-EPMC10487589 | biostudies-literature

Yin and Yang in Post-Translational Modifications of Human D-Amino Acid Oxidase.

Not available

S-EPMC8141710 | biostudies-literature

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

Cyclic di-GMP sensing via the innate immune signaling protein STING.

Not available

S-EPMC3697849 | biostudies-literature

mRNA profiling reveals divergent roles of PPARa and PPARÃ?/d in regulating mouse liver gene expression (PPARa samples)

Little is known about the role of the transcription factor PPARÃ?/d in liver. Here we set out to better elucidate the function of PPARÃ?/d in liver by comparing the effect of PPARa and PPARÃ?/d deletion using whole genome transcriptional profiling and analysis of plasma and liver metabolites. In fed...

ORGANISM(S): Mus musculus

2010-06-21 | E-GEOD-17863 | biostudies-arrayexpress

A network of acetyl phosphate-dependent modification modulates c-di-AMP homeostasis in Actinobacteria.

Not available

S-EPMC11323494 | biostudies-literature

The virus-induced cyclic dinucleotide 2'3'-c-di-GMP mediates STING-dependent antiviral immunity in Drosophila.

Not available

S-EPMC11781366 | biostudies-literature

A meet-up of acetyl phosphate and c-di-GMP modulates BldD activity for development and antibiotic production.

Not available

S-EPMC10359459 | biostudies-literature

Characterization of the dual regulation by a c-di-GMP riboswitch Bc1 with a long expression platform from Bacillus thuringiensis.