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Unknown (5)
Transcriptomics (3)
Metabolomics (1)

Organisms

Escherichia sp. TW14265 (1)
Pseudomonas aeruginosa (1)
Burkholderia cenocepacia (1)

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biostudies-arrayexpress (3)
MetaboLights (1)

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Mass spectrometry assay (1)

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Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

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2015 (1)
2012 (1)
2010 (1)
2024 (1)

Metabolite Name

(+)-Allopumiliotoxin 267A (1)
(+)-Eudesmin (1)
(-)-Lupinine (1)
(.+/-.)-Laudanosine (1)
(1R,2S)-1-(7,8-Dihydro-6-pteridinyl)-1,2-propanediol (1)
(1S,5R)-5-Isopropenyl-2-methyl-2-cyclohexen-1-yl beta-D-glucopyranoside (1)
(2E)-hexadecenoylcarnitine (1)
(2E,2'E)-3,3'-[2,4-Bis(1,3-benzodioxol-5-yl)-1,3-cyclobutanediyl]bis[1-(1-piperidinyl)-2-propen-1-one] (1)
(2R,5R,6R)-3-[(1E,3E)-hepta-1,3-dien-1-yl]-5,6-dihydroxy-2-(hydroxymethyl)cyclohexan-1-one (1)
(2S)-3-Hydroxy-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Phenyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-4-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)pentanoic acid (non-preferred name) (1)
(2S)-5-Carbamimidamido-2-(2-oxo-1-azetidinyl)pentanoic acid (1)
(4-Ethoxyphenyl)urea (1)
(4R)-4-{[(4R)-4-Hydroxy-1-methyl-L-prolyl]oxy}-1-methyl-L-proline (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one*;*Hopantenic acid (1)
(5Z)-3-aminonon-5-enoic acid (1)
(5alpha,7alpha)-17-(Cyclopropylmethyl)-7-(2-hydroxy-3,3-dimethyl-2-butanyl)-6-methoxy-18,19-dihydro-4,5-epoxy-6,14-ethenomorphinan-3-yl beta-D-glucopyranosiduronic acid (1)
(6aR,11aR)-10-(3-Hydroxy-3-methylbutyl)-6a,11a-dihydro-6H-[1]benzofuro[3,2-c]chromene-3,9-diol (1)
(±)15-HETE (1)
.alpha.-Aminoadipic acid (1)
.alpha.-Glucoheptitol (1)
1,3,7-Trimethyluric acid (1)
1,3a,8-Trimethyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3-b]indol-5-yl methylcarbamate (1)
1,6-Dimethoxypyrene (1)
1-Methyl-2,3,4,9-tetrahydro-1H-beta-carboline-1,3-dicarboxylic acid (1)
1-Methyl-L-histidine*,*3-Methyl-L-histidine (1)
1-Nitrosopiperidine (1)

Study type

Comparative genomic hybridization by array (1)
Transcription profiling by array (1)
RNA-seq of coding RNA (1)

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2015 (1)
2012 (1)
2010 (1)
2020 (1)
2018 (1)
2017 (1)
2016 (1)
2013 (1)

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Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics

[1] Transcription profiling of one Burkholderia cenocepacia clinical isolate, J2315, versus a soil isolate, HI2424, in conditions mimicking CF sputum [2] Transcription profiling of Burkholderia cenocepacia isolates J2315 and HI2424 in media mimicking CF sputum or the soil environment [1] J2315 vs. H...

ORGANISM(S): Burkholderia cenocepacia

2010-05-19 | E-GEOD-15817 | biostudies-arrayexpress

Burkholderia cenocepacia-mediated inhibition of Staphylococcus aureus growth and biofilm formation

Staphylococcus aureus asymptomatically colonizes the nasal cavity and pharynx of up to 60% of the human population and, as an opportunistic pathogen, can breach its normal habitat, resulting in life-threatening infections. S. aureus infections are of additional concern for populations with impair...

2024-11-26 | MTBLS11049 | MetaboLights

An Oxygen-Sensing Two-Component System in the Burkholderia cepacia Complex Regulates Biofilm, Intracellular Invasion, and Pathogenicity.

Not available

S-EPMC5234846 | biostudies-literature

A comprehensive analysis of in vitro and in vivo genetic fitness of Pseudomonas aeruginosa using high-throughput sequencing of transposon libraries.

Not available

S-EPMC3764216 | biostudies-literature

A putative lateral flagella of the cystic fibrosis pathogen Burkholderia dolosa regulates swimming motility and host cytokine production.

Not available

S-EPMC5773237 | biostudies-literature

Comparison of inherently essential genes of Porphyromonas gingivalis identified in two transposon-sequencing libraries.

Not available

S-EPMC4788587 | biostudies-literature

Porphyromonas gingivalis genes conferring fitness in a tobacco-rich environment.

Not available

S-EPMC8202090 | biostudies-literature

Genomic diversity of Escherichia isolates from diverse habitats

Comparative genomic hybridization between Escherichia coli strains to determine core and pan genome content of clinical and environmental isolates Two color experiment, Escherichia coli Sakai (reference), clinical and environmental Escherichia coli strains (testers): At least two replicates includin...

ORGANISM(S): Escherichia sp. TW14265

2012-08-30 | E-GEOD-39667 | biostudies-arrayexpress

Pseudomonas aeruginosa PA14 differential gene expression in bqsR (PA14_29730) mutants

Before and after anaerobic Fe(II) shocked WT and M-bM-^HM-^FbqsR of late stationary phase P. aeruginosa PA14 strains Associated publication: Kreamer NN, Costa F, Newman DK. 2015. The ferrous iron-responsive BqsRS two-component system activates genes that promote cationic stress tolerance. mBio 6(1):...

ORGANISM(S): Pseudomonas aeruginosa

2015-02-01 | E-GEOD-65393 | biostudies-arrayexpress

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