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GenomicsChIPseq examination of EAP-1 binding across generations of spr-5(by101) mutant worms
How epigenetic information is transmitted from generation to generation remains largely unknown. Deletion of the C. elegans Histone H3 lysine 4 dimethyl (H3K4me2) demethylase spr-5 leads to inherited accumulation of the euchromatic H3K4me2 mark and progressive decline in fertility. Here we identifie...
ORGANISM(S): Caenorhabditis elegans 
2014-04-08 | E-GEOD-52102 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor N2::POL II Binding Regions in Young Adult
modENCODE_submission_2441 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-02-18 | E-GEOD-25794 | biostudies-arrayexpress
GenomicsPartitioning the C. elegans genome by nucleosome modification, occupancy, and positioning
We have characterized two post-translational histone modifications in C. elegans on a genomic scale. Micrococcal nuclease digestion and immunoprecipitation were used to obtain distinct populations of single nucleosome cores, which were analyzed using massively parallel DNA sequencing to obtain pos...
ORGANISM(S): Caenorhabditis elegans 
2009-08-31 | E-GEOD-17284 | biostudies-arrayexpress
UnknownPopulation abundance in arctic grayling using genetics and close-kin mark-recapture.
Not available
S-EPMC8093667 | biostudies-literature
GenomicsHistone H3K9me3 ChIP-seq of young adult C. elegans wildtype, and mutants emb-4 (qm31) and hrde-1 (tm1200)
This data set was generated to study the silencing of transposable elements by the histone H3K9me3 mark and its relevance for the nuclear RNAi pathway.
ORGANISM(S): Caenorhabditis elegans 
2017-06-29 | E-MTAB-5662 | biostudies-arrayexpress
GenomicsGenome-wide maps of chromatin state in early erythroid precursors versus later, more differentiated erythroblasts.
Here we globally analyzed mRNA and epigenetic changes in both early erythroid progenitors and late erythroblasts. Concomitant with gene induction there was an increase in RNA Pol II binding and activation marks near the transcriptional start site (TSS) and the elongation mark H3K79me2 (but not H3K3...
ORGANISM(S): Mus musculus 
2011-08-23 | E-GEOD-27893 | biostudies-arrayexpress
UnknownPlasma triacylglycerol length and saturation level mark healthy aging groups in humans.
Not available
S-EPMC11979014 | biostudies-literature
Transcriptomicspathogen_Pluminscens_25dC_24hr_exposure_post-adulthood_N2_tiling_array
modENCODE_submission_486 This submission comes from a modENCODE project of Robert Waterston. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome til...
ORGANISM(S): Caenorhabditis elegans 
2010-08-04 | E-GEOD-23272 | biostudies-arrayexpress
Transcriptomicspathogen_Smarcescens_25dC_48hr_exposure_post-adulthood_N2_tiling_array
modENCODE_submission_488 This submission comes from a modENCODE project of Robert Waterston. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome til...
ORGANISM(S): Caenorhabditis elegans 
2010-08-04 | E-GEOD-23274 | biostudies-arrayexpress
Transcriptomicspathogen_Smarcescens_25dC_24hr_exposure_post-adulthood_N2_tiling_array
modENCODE_submission_489 This submission comes from a modENCODE project of Robert Waterston. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome til...
ORGANISM(S): Caenorhabditis elegans 
2010-08-04 | E-GEOD-23275 | biostudies-arrayexpress
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