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GenomicsJBP1-seq: a fast and efficient method for genome-wide profiling of 5hmC
We developed a novel approach, J-binding protein 1 sequencing (JBP1-seq), that combines the benefits of an improved recombinant JBP1 protein, Nextera-based library construction, and nextgeneration sequencing (NGS) for genome-wide profiling of 5-hydroxymethylcytosine (5hmC). Compared with the orig...
ORGANISM(S): Homo sapiens 
2014-11-26 | E-GEOD-61193 | biostudies-arrayexpress
UnknownLead Exposure Causes Spinal Curvature during Embryonic Development in Zebrafish.
Not available
S-EPMC9455242 | biostudies-literature
UnknownFood withdrawal alters the gut microbiota and metabolome in mice.
Not available
S-EPMC9292403 | biostudies-literature
UnknownJia-ga-song-tang protection against alcoholic liver and intestinal damage.
Not available
S-EPMC9549243 | biostudies-literature
UnknownThe Metabolites and Mechanism Analysis of Genistin against Hyperlipidemia via the UHPLC-Q-Exactive Orbitrap Mass Spectrometer and Metabolomics.
Not available
S-EPMC10005657 | biostudies-literature
ProteomicsMass spectrometry (MS) datasets of QKI5 co-immunoprecipitation samples in THP-1 cells
We performed QKI5 co-immunoprecipitation followed by MS analysis to identify QKI5-interacting proteins in THP-1 cells.
ORGANISM(S): Homo sapiens (Human) 
2021-09-27 | PXD028743 | Pride
Qki5 co-immunoprecipitation  mass spectrometry  thp-1 cells 
ProteomicsA global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation [RBP screening THP-1 cells]
We process mass spectrome datasets of RNA binding proteins(RBPs) in soluble nuclear extract (SNE) and chromatin-pellet extract (CPE) from THP-1 cells.
ORGANISM(S): Homo sapiens (Human) 
2021-09-27 | PXD028787 | Pride
Nuclear rbp  thp-1 cells 
ProteomicsA global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation [RBP screening 293T cells]
We process mass spectrome datasets of RNA binding proteins(RBPs) in soluble nuclear extract (SNE) and chromatin-pellet extract (CPE) from 293T cells.
ORGANISM(S): Homo sapiens (Human) 
2021-09-27 | PXD028660 | Pride
Nuclear rbp  293t cells 
ProteomicsA global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation [RBP screening K562 cells]
We process mass spectrome datasets of RNA binding proteins(RBPs) in soluble nuclear extract (SNE) and chromatin-pellet extract (CPE) from K562 cells.
ORGANISM(S): Homo sapiens (Human) 
2021-09-27 | PXD028668 | Pride
Nuclear rbp  k562 cells 
ProteomicsProtection by Jia-Ga-Song-Tang from Alcohol-induced Liver and Intestines damage
The effects of JGST in the liver of ALD mice were investigated by TMT proteomic analysis.
ORGANISM(S): Mus Musculus 
2022-06-28 | PXD034952 |
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