Yu Liming L - OmicsDI

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Genomics (10)
Transcriptomics (5)
Unknown (4)
Proteomics (3)
Metabolomics (2)

Organisms

Homo sapiens (14)
Mus musculus (4)

Repository

EGA (9)
biostudies-arrayexpress (6)
iProX (2)
MetaboLights (2)
pride (1)

Tissue

Blood serum (1)

Technology Type

Mass spectrometry (2)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (3)
2015 (2)
2013 (1)
2011 (1)
2009 (1)
2005 (1)
2024 (1)
2021 (1)

CHEBI ID

CHEBI:10055 (1)
CHEBI:101085 (1)
CHEBI:1060 (1)
CHEBI:113542 (1)
CHEBI:116314 (1)
CHEBI:125471 (1)
CHEBI:131158 (1)
CHEBI:131456 (1)
CHEBI:131659 (1)
CHEBI:131690 (1)
CHEBI:132244 (1)
CHEBI:132837 (1)
CHEBI:133013 (1)
CHEBI:133066 (1)
CHEBI:133172 (1)
CHEBI:133185 (1)
CHEBI:133657 (1)
CHEBI:133919 (1)
CHEBI:134287 (1)
CHEBI:134458 (1)
CHEBI:134485 (1)
CHEBI:134676 (1)
CHEBI:134713 (1)
CHEBI:134788 (1)
CHEBI:134841 (1)
CHEBI:134862 (1)
CHEBI:134905 (1)
CHEBI:134934 (1)
CHEBI:135118 (1)
CHEBI:135290 (1)

Metabolite Name

(+)-8'-hydroxyabscisic acid (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-d-glucoside (1)
(-)-lupinine (1)
(11z,14z)-eicosadienoylcarnitine (1)
(1s,2r)-1,2-dihydrodibenzo[b,d]thiophene-1,2-diol (1)
(1s,2r,3s,5s,6s,16e,18e,20r,21s)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,16-trimethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl 2-methylpropanoate (1)
(2,7-dimethyloctahydro-1h-cyclopenta[c]pyridin-4-yl)methanol (1)
(2e)-2-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-ylidene]-1,6-dioxaspiro[4.4]non-3-ene (1)
(2r,3s)-2-methylcitric acid (1)
(2s,3r,4e,8e)-3-hydroxy-2-[methyl(stearoyl)amino]-4,8-octadecadien-1-yl hydrogen sulfate (1)
(2s,3s,4s,5r,6s)-6-(hydroxymethyl)-5-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)-5-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2,3,4,5-tetrol (1)
(2s,4ar,4br,6as,12bs,12cs,14as)-2-(2-hydroxy-2-propanyl)-12b,12c-dimethyl-3,4,5,6,6a,7,12,12b,12c,13,14,14a-dodecahydro-2h-chromeno[5',6':6,7]indeno[1,2-b]indole-4a(4bh)-carbaldehyde (1)
(2s,4s)-4-amino-2-hydroxy-2-methylpentanedioic acid (1)
(2s,4s)-pinnatanine (1)
(2z)-3-{5-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-yl]-2-furyl}acrylaldehyde (1)
(2z,4z)-2-hydroxyhexa-2,4-dienoic acid (1)
(3-methyl-2-butenyl)-benzene (1)
(3s,5r,6s,7e,9x)-7-megastigmene-3,6,9-triol 9-glucoside (1)
(4-methylphenyl)acetaldehyde (1)
(4e,6e,d14:2) sphingosine (1)
(7s)-7-{[(2s)-9-hydroxy-2-isobutyl-3-oxo-2,3,9,9a-tetrahydro-1h-imidazo[1,2-a]indol-9-yl]methyl}-6,7-dihydroquinazolino[3,2-a][1,4]benzodiazepine-5,13-dione (1)
(9e,15e)-heptadec-9,15-trien-11,13-diyn-4-one (1)
(?)-2-methylthiazolidine (1)
(ac)2-l-lys-d-ala (1)
(r)-n-methylsalsolinol (1)
(r)-pelletierine (1)
(s)-3-octanol glucoside (1)
(s)-5'-deoxy-5'-(methylsulfinyl)adenosine (1)
(s)-menthone 8-thioacetate (1)
(x)-2-heptanol glucoside (1)

Study type

Transcription profiling by array (5)
ChIP-seq (1)

Release Date

2015 (2)
2013 (1)
2011 (1)
2009 (1)
2005 (1)
2026 (1)
2022 (1)
2021 (1)
2017 (1)

Lab affiliation

CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, Institute of High Energy Physics and National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)

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A novel strategy for mining and identification of acylcarnitines using data-independent-acquisition (DIA) based retention time prediction modeling and pseudo-characteristic fragmentation ions matching

It is a challenging work to screen, identify, and quantify acylcarnitines in complex biological samples. A method, based on the retention time (RT) prediction and data-independent acquisition strategies, was proposed for the large-scale identification of acylcarnitines using liquid chromatography co...

2021-10-06 | MTBLS1932 | MetaboLights

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Untargeted metabolomics)

Naïve human embryonic stem cells (hESCs) that resemble the pre-implantation epiblasts are fueled by a combination of aerobic glycolysis and oxidative phosphorylation, but their mitochondrial regulators are poorly understood. Here we report that, proline dehydrogenase (PRODH), a mitochondria-local...

2024-02-12 | MTBLS7840 | MetaboLights

Conductive Poly(vinyl alcohol)/Multiwalled Carbon Nanotubes Nanofiber Membranes with High Environmental Stability.

Not available

S-EPMC12917829 | biostudies-literature

Transcription profiling of human immunoglobulin mutation genotype in B Cell chronic lymphocytic leukaemia

The Journal of Experimental Medicine, Volume 194, Number 11, December 3, 2001 1639-1648 Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia Andreas Rosenwald1, Ash A. Alizadeh2, George Widhopf5, Richard Simon6, R. Eric Davis1, Xin Yu1, ...

ORGANISM(S): Homo sapiens

2005-06-29 | E-SMDB-1002 | biostudies-arrayexpress

Transcription profiling of mouse 3T3-MEFs derived from wild-type and SMRT RID mutants

SMRT (silencing mediator of retinoid and thyroid hormone receptors) is recruited by numerous transcription factors to mediate lineage and signal dependent transcriptional repression. We generated a knock-in mutation in the receptor interaction domain (RID) of SMRT (SMRTmRID) that solely disrupts it...

ORGANISM(S): Mus musculus

2009-01-18 | E-GEOD-13143 | biostudies-arrayexpress

Metformin reverses bFGF-induced epithelial-mesenchymal transition in HCC cells.

Not available

S-EPMC5732803 | biostudies-literature

ERRγ links adaptive neuronal metabolism to spatial learning and memory [ChIP-Seq]

Neurons utilize glucose to generate adenosine triphosphate (ATP) essential for their survival, excitability and synaptic signaling, as well as initiating changes in neuronal structure and function. Defects in oxidative metabolism and mitochondria functions are also associated with aging and diverse ...

ORGANISM(S): Mus musculus

2015-09-03 | E-GEOD-47134 | biostudies-arrayexpress

ERRγ links adaptive neuronal metabolism to spatial learning and memory [Array data]

ORGANISM(S): Mus musculus

2015-09-03 | E-GEOD-47133 | biostudies-arrayexpress

SMRT-RID mutation linked to Type I Pneumocyte Associated Respiratory Distress Syndrome via TR repression

We show that knock-in mutations of the nuclear corepressor SMRT in C57Bl6 mice (SMRTmRID) produces a novel respiratory distress syndrome (RDS) due to prematurity of the type I pneumocyte. Treatment with the anti-thyroid hormone drug, propylthiouracil (PTU), completely rescues the SMRT-induced RDS, ...

ORGANISM(S): Mus musculus

2011-10-13 | E-GEOD-30661 | biostudies-arrayexpress

Selective Regulation of Macrophage Lipid Metabolism via Nanomaterials’ Surface Chemistry

Understanding the interfacial structure between nanomaterials and lipoproteins is crucial for gaining profound insights into how nanomaterials impact lipoprotein structure and interfere with lipid metabolism. In this study, we employed graphene oxide (GO) nanosheets (NSs) with precisely controlled s...

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD044475 | Pride

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