Yu Mi M - OmicsDI

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Unknown (1034)
Transcriptomics (27)
Proteomics (27)
Genomics (22)
Metabolomics (8)
Models (4)
Other (1)

Organisms

Homo sapiens (42)
Mus musculus (22)
Rattus norvegicus (3)
Danio rerio (2)
Escherichia coli (1)
Rattus (1)
Pinus taeda (1)
Pseudomonas aeruginosa PAO1 (1)
Neurospora crassa OR74A (1)
Arabidopsis thaliana (1)
Haloferax volcanii DS2 (1)
Physcomitrium patens (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Zea mays (1)

Organisms

Rattus norvegicus (1)

Repository

biostudies-arrayexpress (29)
EGA (18)
pride (17)
MetaboLights (8)
iProX (6)
BioModels (4)
MassIVE (4)
geo (1)
GPMDB (1)
ENA (1)

Tissue

Cell culture (7)
Epithelial cell (2)
Heart (2)
Kidney (2)
Blood plasma (1)
Esophagus (1)
Gametophore (1)
Leaf (1)
Photosynthetic cell (1)
Plant cell (1)
Protonema (1)
Seed (1)
Skin epidermis (1)
Spleen (1)
T cell (1)

Disease

Benign nevi (1)
Normal (1)
Not Available (1)
Breast cancer (1)
Cervix carcinoma (1)
Disease free (1)
Eosinophilic esophagitis (1)

Technology Type

Mass Spectrometry (17)
Mass spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Shotgun proteomics (5)
Bottom-up proteomics (4)
Gel-based experiment (4)
Data-dependent acquisition (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
NMR spectroscopy (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (8)
TripleTOF 5600 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 3000 (1)
Instrument (1)
Orbitrap Fusion (1)
Bruker (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (11)
2021 (9)
2025 (7)
2020 (5)
2022 (5)
2013 (4)
2012 (4)
2010 (3)
2023 (3)
2005 (2)
2011 (2)
2008 (2)
2016 (2)
2019 (2)
2015 (1)
2009 (1)
2007 (1)
2003 (1)
2004 (1)
2017 (1)
2026 (1)

UNIPROT ID/AC

D4A244 (1)
O14974 (1)
O94810 (1)
P00734 (1)
P05976 (1)
P07522 (1)
P11345 (1)
P17252 (1)
P25116 (1)
P25427 (1)
P28028 (1)
P29992 (1)
P35739 (1)
P36506 (1)
P47736 (1)
P61586 (1)
P62158 (1)
P62716 (1)
P62873 (1)
P62994 (1)
P63086 (1)
P63211 (1)
P63331 (1)
Q01986 (1)
Q03113 (1)
Q13464 (1)
Q14643 (1)
Q4QQV2 (1)
Q5M824 (1)
Q62636 (1)

CHEBI ID

CHEBI:17351 (4)
CHEBI:15724 (3)
CHEBI:15891 (3)
CHEBI:16335 (3)
CHEBI:16359 (3)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:16919 (3)
CHEBI:17154 (3)
CHEBI:17368 (3)
CHEBI:17553 (3)
CHEBI:17562 (3)
CHEBI:17568 (3)
CHEBI:17724 (3)
CHEBI:17750 (3)
CHEBI:28044 (3)
CHEBI:73134 (3)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:136085 (2)
CHEBI:15354 (2)
CHEBI:15698 (2)
CHEBI:15727 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:16595 (1)
CHEBI:17268 (1)
CHEBI:18035 (1)
CHEBI:18348 (1)
CHEBI:29108 (1)

Metabolite Name

Linoleic acid (3)
2-Methylbutyroylcarnitine (2)
Acetylcarnitine (2)
Cholic acid (2)
Creatine (2)
Creatinine (2)
Deoxycytidine (2)
Dihydrouracil (2)
Glutathione (2)
Glycerophosphocholine (2)
Guanosine (2)
Hypoxanthine (2)
Inosine (2)
N-Palmitoylsphingosine (2)
N4-Acetylcytidine (2)
PC(16:0/0:0) (2)
PC(18:2/18:2) (2)
Phosphocreatine (2)
Riboflavin (2)
Taurine (2)
Trigonelline (2)
Trimethylamine N-oxide (2)
(-)-3-Cyanomethyl-3-hydroxy-1H-indol-2(3H)-one (1)
(-)-Riboflavin (1)
(3-Carboxypropyl)trimethylammonium cation (1)
(4Z,7Z,10Z,13Z,16Z,19Z)-4,7,10,13,1 6,19-Docosahexaenoic acid (1)
(5-L-Glutamyl)-L-glutamine (1)
(R)-3-Hydroxybutyric acid (1)
1,2-dihydroxy-3,4-dimethoxyisoflavan-7-O-beta-D-glucoside (1)
1,2-dioleoyl-sn-glycero-3-phosphatidylcholine (1)

IsPrivate

False (4)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA (7)
ATAC-seq (3)
ChIP-seq (2)
Unknown experiment type (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (133)
2025 (128)
2024 (119)
2022 (107)
2023 (104)
2020 (85)
2015 (56)
2019 (56)
2017 (53)
2018 (51)
2016 (43)
2014 (32)
2013 (23)
2026 (19)
2011 (16)
2012 (15)
2010 (7)
2008 (6)
2009 (5)
2007 (2)
2003 (2)
2005 (1)

Lab affiliation

Department of Nephrology, Tokyo Medical and Dental University (TMDU), Tokyo 113-8510, Japan (2)
Biological mass spectrometry and proteomics group, Department of Chemistry High-resolution mass spectrometry platform, Core research facilities Guangdong provincial key laboratory for cell microenvironment and disease research Southern University of Science and Technology (SUSTech) 403, 1st research building, 1088 Xueyuan Rd., Nanshan, Shenzhen (1)
COld Spring Harbor Laboratory (1)
Children's Hospital of Nanjing Medical University (1)
Crop Genetics John Innes Centre Norfolk United Kingdom (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Medicine, Section of Dermatology, University of Chicago, Chicago, IL, USA (1)
Department of Microbiology & Immunology, 2the Cancer Center, Medical College of Wisconsin Department of Medicine, Medical College of Wisconsin, Milwaukee, WI (1)
Department of Pediatrics Dr. von Hauner Children’s Hospital University Hospital LMU Munich Lindwurmstr. 4 80337 Munich, Germany (1)
Department of Pharmacology, College of Basic Medical Sciences, Jilin University, Changchun, 130000, China (1)
Department of Surgery, University of Michigan Medical School, Ann Arbor, MI, USA (1)
Max Planck Institute for Biophysical Chemistry; University Medical Center Goettingen (1)
Shandong Provincial Hospital for Skin Diseases & Shandong Provincial Institute of Dermatology and Venereology, Shandong First Medical University & Shandong Academy of Medical Sciences (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)
Weill Institute for Cell and Molecular Biology, Department of Computational Biology, Cornell University (1)

Tags

xref:PubMed:15150374 (1)

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Mi-2β promotes immune evasion in melanoma by activating EZH2 methylation

For identification of Mi-2β-interacting proteins, B16F10 cells (1 × 108) were collected and washed three times with PBS and lysed in lysis buffer on ice for 30 min. Cell lysates were collected and then isolated over night by anti-Mi-2β magnetic agarose beads. The anti-Mi-2β magnetic agarose beads we...

ORGANISM(S): Mus Musculus

2024-02-18 | PXD049467 |

Sperm but not oocyte DNA methylome is inherited by zebrafish early embyros

5-methylcytosine is a major epigenetic modification sometimes called "the fifth nucleotide". However, our knowledge of how offspring inherit the DNA methylome from parents is limited. We generated nine single-base resolution DNA methylomes including zebrafish gametes and early embryos. The...

ORGANISM(S): Danio rerio

2013-05-20 | E-GEOD-44075 | biostudies-arrayexpress

Exercise-generated β-aminoisobutyric acid (BAIBA) reduces cardiomyocytes metabolic stress and apoptosis caused by mitochondrial dysfunction through the miR-208b/AMPK pathway

OBJECTIVE: To explore the cardioprotective effects of exercise-derived β-aminoisobutyric (BAIBA) on cardiomyocyte apoptosis and energy metabolism in a rat model of heart failure (HF).

METHODS: In male Sprague-Dawley rats (8-week-old), myocardial infarction ...

2022-03-08 | MTBLS3927 | MetaboLights

An unconventionally secreted effector from the root knot nematode Meloidogyne incognita, Mi-ISC-1, promotes parasitism by disrupting salicylic acid biosynthesis in host plants.

Not available

S-EPMC8916211 | biostudies-literature

Mi-2β promotes immune evasion in melanoma by activating EZH2 methylation.

Not available

S-EPMC10924921 | biostudies-literature

MI-773, a breaker of the MDM2/p53 axis, exhibits anticancer effects in neuroblastoma via downregulation of INSM1.

Not available

S-EPMC8548782 | biostudies-literature

Quantitative proteomics uncovers the regulation of energy metabolism by Shexiang Baoxin Pill in myocardial infarction model rats

Ethnopharmacological relevance: Shexiang Baoxin Pill (SBP) is a traditional formulation of a Chinese patent medicine, which has been commonly used for the treatment of cardiovascular disease (CVD) in China since the 1980s. Previous clinical studies have shown that SBP is safe and effective in patien...

ORGANISM(S): Rattus norvegicus (Rat)

2020-12-14 | PXD019296 | Pride

Comparative and Combinatorial Effects of Resveratrol and Sacubitril/Valsartan alongside Valsartan on Cardiac Remodeling and Dysfunction in MI-Induced Rats.

Not available

S-EPMC8401506 | biostudies-literature

Antidepressant functions of Jie Yu Chu Fan capsule in promoting hippocampal nerve cell neurogenesis in a mouse model of chronic unpredictable mild stress.

Not available

S-EPMC7475495 | biostudies-literature

Observation of Yu-Shiba-Rusinov States and Inelastic Tunneling Spectroscopy for Intramolecule Magnetic Exchange Interaction Energy of Terbium Phthalocyanine (TbPc) Species Adsorbed on Superconductor NbSe₂.

Not available

S-EPMC9134493 | biostudies-literature

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